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Cellosaurus WA09 (CVCL_9773)

[Text version]
Cell line name WA09
Synonyms WA 09; WA-09; WA9; H9; H9.hESCs; H9 ESC; H9 hES; H9ES; GE09; WAe003-A; WICELLe003-A; WAe009-A; WA09-PCBC; PCBC02hse2014030502; SC14-067; UKERe008-A
Accession CVCL_9773
Resource Identification Initiative To cite this cell line use: WA09 (RRID:CVCL_9773)
Comments Group: Clinical grade pluripotent cell line.
Part of: ENCODE project common cell types; tier 3.
Part of: NHBLI Progenitor Cell Biology Consortium (PCBC) collection.
From: University of Wisconsin; Madison; USA.
Registration: NIH Human Embryonic Stem Cell Registry; NIHhESC-10-0062.
Registration: Swiss research registry; BAG-hES-IMP-0016.
Registration: UK Stem Cell Bank (UKSCB); Steering comm. appl. SCSC06-18/SCSC11-06.
Omics: Genomics; ChIP-seq; H2AK5ac.
Omics: Genomics; ChIP-seq; H2BK12ac.
Omics: Genomics; ChIP-seq; H2BK15ac.
Omics: Genomics; ChIP-seq; H2BK5ac.
Omics: Genomics; ChIP-seq; H3K18ac.
Omics: Genomics; ChIP-seq; H3K23ac.
Omics: Genomics; ChIP-seq; H3K23me2.
Omics: Genomics; ChIP-seq; H3K27ac.
Omics: Genomics; ChIP-seq; H3K27me3.
Omics: Genomics; ChIP-seq; H3K36me3.
Omics: Genomics; ChIP-seq; H3K4ac.
Omics: Genomics; ChIP-seq; H3K4me1.
Omics: Genomics; ChIP-seq; H3K4me2.
Omics: Genomics; ChIP-seq; H3K4me3.
Omics: Genomics; ChIP-seq; H3K56ac.
Omics: Genomics; ChIP-seq; H3K79me1.
Omics: Genomics; ChIP-seq; H3K79me2.
Omics: Genomics; ChIP-seq; H3K9ac.
Omics: Genomics; ChIP-seq; H3K9me3.
Omics: Genomics; ChIP-seq; H4K20me1.
Omics: Genomics; ChIP-seq; H4K5ac.
Omics: Genomics; ChIP-seq; H4K8ac.
Omics: Genomics; ChIP-seq; H4K91ac.
Omics: Genomics; DNA methylation analysis.
Omics: Genomics; Whole exome sequencing.
Omics: Genomics; Whole genome sequencing.
Omics: Proteomics.
Omics: Proteomics; PTM; Phosphorylation.
Omics: Proteomics; Subcellular; Mitochondrion.
Omics: Transcriptomics; Microarray.
Omics: Transcriptomics; RNAseq.
Omics: Transcriptomics; Serial analysis of gene expression (SAGE).
Omics: Variations; Array-based CGH.
Omics: Variations; SNP array analysis.
Anecdotal: WA01, WA07, WA09, WA13 and WA14 were the first human embryonic stem cells to be established.
Derived from site: In situ; Blastocyst; UBERON=UBERON_0000358.
Cell type: Embryonic stem cell; CL=CL_0002322.
Sequence variations
  • Mutation; HGNC; HGNC:11998; TP53; Simple; p.Pro151Ser (c.451C>T); ClinVar=VCV000012370; Zygosity=Unspecified; Note=Somatic mutation acquired during proliferation (PubMed=28445466).
  • Mutation; HGNC; HGNC:11998; TP53; Simple; p.Arg181His (c.542G>A); ClinVar=VCV000142320; Zygosity=Unspecified; Note=Somatic mutation acquired during proliferation (PubMed=28445466).
  • Mutation; HGNC; HGNC:11998; TP53; Simple; p.Arg248Gln (c.743G>A); ClinVar=VCV000012356; Zygosity=Unspecified; Note=Somatic mutation acquired during proliferation (PubMed=28445466).
  • Mutation; HGNC; HGNC:11998; TP53; Simple; p.Arg267Trp (c.799C>T); ClinVar=VCV000141764; Zygosity=Unspecified; Note=Somatic mutation acquired during proliferation (PubMed=28445466).
HLA typing Source: PubMed=16919167
Class I
HLA-AA*02:03
HLA-BB*35,44
HLA-CC*04,07
Class II
HLA-DQDQB1*05,06
HLA-DRDRB1*15,16:01
DRB5*01
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Hierarchy Children:
CVCL_RU14 (4D20.8)CVCL_RU17 (4SKEL20)CVCL_RU15 (7PEND24)
CVCL_RU16 (7SMOO32)CVCL_RX99 (BC1 [Human NSC])CVCL_C9EC (CHOPe003-A)
CVCL_A1AT (CSUe011-A)CVCL_RU20 (EN7)CVCL_GS51 (ENStem-A)
CVCL_E4CE (EYQ2-20)CVCL_C4EK (H9 AAVS1-TRE3G-NGN2)CVCL_U160 (H9 Cre-LoxP)
CVCL_U161 (H9 hNanog-pGZ)CVCL_U162 (H9 hOct4-pGZ)CVCL_U163 (H9 inGFPhES)
CVCL_E7GG (H9 NR4A2-eGFP)CVCL_C4EP (H9 PINK1-/-)CVCL_C8ZD (H9 Rex1-EGFP)
CVCL_JL69 (H9 RM)CVCL_U164 (H9 Syn-GFP)CVCL_U165 (H9-hTnnT2-pGZ-TD2)
CVCL_E7G4 (H9-iCas9)CVCL_E7G6 (H9-iCas9.SAM)CVCL_IU37 (H9-NSC)
CVCL_JW66 (H9-SOX2-GFP)CVCL_F0CV (H9-T-Venus)CVCL_D1GU (H9-WISP3KO)
CVCL_C0VX (H9EOS)CVCL_JL61 (H9Keap1KO-A31)CVCL_JJ84 (H9Nrf2KO-A13)
CVCL_C5TU (H9SNTA1KO)CVCL_UZ63 (hESderK/E6E7 clK)CVCL_B0JB (ID1-V-LUC hES)
CVCL_GR22 (iPS-MSC-H9)CVCL_U171 (LT2e-H9CAGGFP)CVCL_RU21 (MEL2)
CVCL_U176 (NSC-H9)CVCL_D0QJ (SDQLCHe001-A)CVCL_RU22 (SK11)
CVCL_RU23 (SM22)CVCL_RU24 (SM28)CVCL_RV29 (SM30)
CVCL_D8GA (Ubigene H9 CDYL KO)CVCL_D8GB (Ubigene H9 FGF12 KO)CVCL_D8GC (Ubigene H9 FGF14 KO)
CVCL_D8GD (Ubigene H9 MIR503HG KO)CVCL_D8GE (Ubigene H9 SIRT2 KO)CVCL_C7FI (UKERe008-A-1)
CVCL_C7FJ (UKERe008-A-2)CVCL_C7FK (UKERe008-A-3)CVCL_C7FL (UKERe008-A-4)
CVCL_C7FM (UKERe008-A-5)CVCL_C7FN (UKERe008-A-6)CVCL_C7FP (UKERe008-A-7)
CVCL_C7FQ (UKERe008-A-8)CVCL_C7FR (UKERe008-A-9)CVCL_RU25 (W10)
CVCL_E6BE (WA09 BIN3 OE)CVCL_B5ZJ (WA09 CRX+/tdTomato)CVCL_GQ06 (WA09 MIXL1-2A-eGFP)
CVCL_C811 (WAe009-A-1)CVCL_C100 (WAe009-A-10)CVCL_UM37 (WAe009-A-11)
CVCL_UG28 (WAe009-A-12)CVCL_UG29 (WAe009-A-13)CVCL_UM38 (WAe009-A-14)
CVCL_WW89 (WAe009-A-16)CVCL_ZB39 (WAe009-A-17)CVCL_ZC37 (WAe009-A-18)
CVCL_WJ41 (WAe009-A-19)CVCL_D6K3 (WAe009-A-1A)CVCL_D6K4 (WAe009-A-1B)
CVCL_D1GC (WAe009-A-1C)CVCL_D1GD (WAe009-A-1D)CVCL_D6SC (WAe009-A-1E)
CVCL_D6SA (WAe009-A-1F)CVCL_D6PC (WAe009-A-1G)CVCL_D6SD (WAe009-A-1H)
CVCL_D6SE (WAe009-A-1S)CVCL_D6SF (WAe009-A-1T)CVCL_D6SG (WAe009-A-1U)
CVCL_D6SB (WAe009-A-1Y)CVCL_D6SH (WAe009-A-1Z)CVCL_C812 (WAe009-A-2)
CVCL_WJ42 (WAe009-A-20)CVCL_YJ22 (WAe009-A-21)CVCL_ZB40 (WAe009-A-22)
CVCL_WZ23 (WAe009-A-23)CVCL_YN82 (WAe009-A-24)CVCL_ZB41 (WAe009-A-25)
CVCL_A1YF (WAe009-A-26)CVCL_ZB42 (WAe009-A-28)CVCL_ZB43 (WAe009-A-29)
CVCL_E4DC (WAe009-A-2A)CVCL_E4DD (WAe009-A-2B)CVCL_ZB44 (WAe009-A-30)
CVCL_ZB45 (WAe009-A-31)CVCL_ZB46 (WAe009-A-32)CVCL_ZB47 (WAe009-A-33)
CVCL_ZB48 (WAe009-A-34)CVCL_ZB49 (WAe009-A-35)CVCL_ZX63 (WAe009-A-36)
CVCL_A1PJ (WAe009-A-37)CVCL_A4DV (WAe009-A-38)CVCL_A7IL (WAe009-A-39)
CVCL_VE22 (WAe009-A-4)CVCL_WM07 (WAe009-A-40)CVCL_A1YG (WAe009-A-41)
CVCL_A4DW (WAe009-A-42)CVCL_A9XX (WAe009-A-43)CVCL_A1MY (WAe009-A-45)
CVCL_A4UC (WAe009-A-46)CVCL_A4UB (WAe009-A-47)CVCL_A4TZ (WAe009-A-48)
CVCL_A7HB (WAe009-A-49)CVCL_DQ84 (WAe009-A-5)CVCL_A5EP (WAe009-A-50)
CVCL_A7HC (WAe009-A-51)CVCL_A7HD (WAe009-A-52)CVCL_A7HE (WAe009-A-53)
CVCL_A7HF (WAe009-A-54)CVCL_A7HG (WAe009-A-55)CVCL_A5EQ (WAe009-A-56)
CVCL_A7NC (WAe009-A-58)CVCL_A7RX (WAe009-A-59)CVCL_DQ83 (WAe009-A-6)
CVCL_A8DI (WAe009-A-60)CVCL_A7RW (WAe009-A-61)CVCL_A7RV (WAe009-A-62)
CVCL_B3RP (WAe009-A-67)CVCL_B0FR (WAe009-A-69)CVCL_VE23 (WAe009-A-7)
CVCL_B3PX (WAe009-A-70)CVCL_B0JR (WAe009-A-71)CVCL_B3SB (WAe009-A-72)
CVCL_B3S6 (WAe009-A-73)CVCL_B3S7 (WAe009-A-74)CVCL_B3SA (WAe009-A-75)
CVCL_B5QI (WAe009-A-76)CVCL_B5QJ (WAe009-A-78)CVCL_B5QK (WAe009-A-79)
CVCL_VE36 (WAe009-A-8)CVCL_B5QL (WAe009-A-80)CVCL_B5QM (WAe009-A-81)
CVCL_B5QN (WAe009-A-82)CVCL_C0GL (WAe009-A-83)CVCL_C9JC (WAe009-A-84)
CVCL_C0JE (WAe009-A-86)CVCL_C0JD (WAe009-A-88)CVCL_C1JM (WAe009-A-89)
CVCL_VE37 (WAe009-A-9)CVCL_C1JN (WAe009-A-91)CVCL_C4RV (WAe009-A-92)
CVCL_C6U6 (WAe009-A-93)CVCL_C4P7 (WAe009-A-94)CVCL_C3LH (WAe009-A-95)
CVCL_C3LI (WAe009-A-96)CVCL_C3LJ (WAe009-A-97)CVCL_C9GZ (WAe009-A-98)
CVCL_C6TU (WAe009-A-99)CVCL_C9J9 (WAe009-A-A)CVCL_C9H0 (WAe009-A-B)
CVCL_C9JA (WAe009-A-C)CVCL_D6KQ (WAe009-A-D)CVCL_WN07 (WAe009-A-G)
CVCL_C7FS (WAe009-A-H)CVCL_C3RE (WAe009-A-J)CVCL_C0CX (WAe009-A-L)
CVCL_C9JB (WAe009-A-N)CVCL_VP31 (WAe009-A-O)CVCL_C9J7 (WAe009-A-P)
CVCL_C9J8 (WAe009-A-Q)CVCL_B5ZI (WAe009-A-R)CVCL_C9GY (WAe009-A-U)
CVCL_E7BH (WAe009-A-V)CVCL_D6K5 (WAe009-A-W)CVCL_D6K6 (WAe009-A-Z)
CVCL_E9C4 (WIZ02e-H9CAGhM4Di)CVCL_E9C5 (WIZ03e-H9CAGhM3Dq)CVCL_E9C6 (WIZ04e-H9CAGmChry)
CVCL_RU26 (Z11)
Sex of cell Female
Age at sampling Blastocyst stage
Category Embryonic stem cell
STR profile Source(s): PubMed=16919167; PubMed=29246576; WiCell=wa09

Markers:
AmelogeninX
CSF1PO11
D2S133818,24
D3S135813,16
D5S81811,12
D7S8209,11
D8S11798,14
D13S3179
D16S53912,13
D18S5113
D19S43312,15
D21S1130
FGA26,28
Penta D9,13
Penta E11,14
TH019.3
TPOX10,11
vWA17

Run an STR similarity search on this cell line
Web pages Info; -; -; https://news.wisc.edu/nih-reapproves-wicells-h9-and-three-other-wisconsin-stem-cell-lines-for-federally-funded-research/
Info; ENCODE; -; http://genome.ucsc.edu/ENCODE/protocols/cell/human/BG02ES_and_H9ES_Myers_protocols.pdf
Info; StemCellDB; -; https://stemcelldb.nih.gov/cellLineDetails/Agilent/13
Info; StRAP; -; https://strap.nci.nih.gov/celline_detail.php?sample_id=88
Publications

PubMed=9804556; DOI=10.1126/science.282.5391.1145
James Alexander Thomson, Joseph Itskovitz-Eldor, Sander S. Shapiro, Michelle A. Waknitz, Jennifer J. Swiergiel, Vivienne S. Marshall, Jeffrey M. Jones;
Embryonic stem cell lines derived from human blastocysts.
Science 282:1145-1147(1998)

PubMed=14745950; DOI=10.1002/dvdy.10431
Melissa K. Carpenter, Elen S. Rosler, Gregory J. Fisk, Ralph Brandenberger, Ximena Ares, Takumi Miura, Mary Theresa Lucero, Mahendra Surendra Rao;
Properties of four human embryonic stem cell lines maintained in a feeder-free culture system.
Dev. Dyn. 229:243-258(2004)

PubMed=16388305; DOI=10.1038/nbt1177
Tenneille E. Ludwig, Mark E. Levenstein, Jeffrey M. Jones, W. Travis Berggren, Erika R. Mitchen, Jennifer L. Frane, Leann J. Crandall, Christine A. Daigh, Kevin R. Conard, Marian S. Piekarczyk, Rachel A. Llanas, James Alexander Thomson;
Derivation of human embryonic stem cells in defined conditions.
Nat. Biotechnol. 24:185-187(2006)

PubMed=16919167; DOI=10.1186/1741-7007-4-28; PMCID=PMC1601965
Richard Josephson, Gregory R. Sykes, Ying Liu, Carol J. Ording, Wei-Ning Xu, Xian-Min Zeng, Soojung Shin, Jeanne Frances Loring, Anirban Maitra, Mahendra Surendra Rao, Jonathan M. Auerbach;
A molecular scheme for improved characterization of human embryonic stem cell lines.
BMC Biol. 4:28.1-28.13(2006)

PubMed=17570852; DOI=10.1186/gb-2007-8-6-r113; PMCID=PMC2394759
Martin Hirst, Allen Delaney, Sean A. Rogers, Angelique Schnerch, Deryck R. Persaud, Michael D. O'Connor, Thomas Zeng, Michelle Moksa, Keith Fichter, Diana Mah, Anne Go ...Show all 32 authors... , Ryan D. Morin, Agnes Baross, Yong-Jun Zhao, Jaswinder Khattra, Anna-Liisa Prabhu, Pawan Pandoh, Helen McDonald, Jennifer K. Asano, Noreen Dhalla, Kevin Ma, Stephanie Lee, Adrian Ally, Neil Chahal, Stephanie Menzies, Asim Siddiqui, Robert A. Holt, Steven J.M. Jones, Daniela S. Gerhard, James Alexander Thomson, Constance Jean Eaves, Marco Antonio Marra; Show fewer authors
LongSAGE profiling of nine human embryonic stem cell lines.
Genome Biol. 8:R113.1-R113.12(2007)

PubMed=17572666; DOI=10.1038/nbt1318
Oluseun Adewumi, Behrouz Aflatoonian, Lars Ahrlund-Richter, Michal Amit, Peter W. Andrews, Gemma Beighton, Paul A. Bello, Nissim Benvenisty, Lorraine S. Berry, Simon Bevan, Barak Blum ...Show all 85 authors... , Justin Brooking, Kevin G. Chen, Andre B.-H. Choo, Gary A. Churchill, Marie Corbel, Ivan Damjanov, Jonathan S. Draper, Petr Dvorak, Katarina Emanuelsson, Roland A. Fleck, Angela Ford, Karin Gertow, Marina Gertsenstein, Paul J. Gokhale, Rebecca S. Hamilton, Ales Hampl, Lyn E. Healy, Outi Hovatta, Johan Hyllner, Marta P. Imreh, Joseph Itskovitz-Eldor, Jamie Jackson, Jacqueline L. Johnson, Mark Jones, Kehkooi Kee, Benjamin L. King, Barbara B. Knowles, Majlinda Lako, Franck Lebrin, Barbara S. Mallon, Daisy Manning, Yoav Mayshar, Ronald Davies Graham McKay, Anna E. Michalska, Milla Mikkola, Maria Mileikovsky, Stephen Lewis Minger, Harry D. Moore, Christine L. Mummery, Andras Nagy, Norio Nakatsuji, Carmel M. O'Brien, Steve Kah-Weng Oh, Cia Olsson, Timo Otonkoski, Kye-Yoon Park, Robert Passier, Hema Patel, Minal J. Patel, Roger Arnold Pedersen, Martin F. Pera, Marian S. Piekarczyk, Renee A. Reijo Pera, Benjamin E. Reubinoff, Allan J. Robins, Janet Rossant, Peter Rugg-Gunn, Thomas C. Schulz, Henrik Semb, Eric S. Sherrer, Henrike Siemen, Glyn N. Stacey, Miodrag Stojkovic, Hirofumi Suemori, Jin Szatkiewicz, Tikva Tako Turetsky, Timo Tuuri, Stieneke van den Brink, Kristina Vintersten, Sanna Vuoristo, Dorien Ward-van Oostwaard, Thomas A. Weaver, Lesley A. Young, Wei-Dong Zhang; Show fewer authors
International Stem Cell Initiative
Characterization of human embryonic stem cell lines by the International Stem Cell Initiative.
Nat. Biotechnol. 25:803-816(2007)

PubMed=20641038; DOI=10.1002/stem.471; PMCID=PMC2996086
Ivan Gutierrez-Aranda, Veronica Ramos-Mejia, Clara Bueno, Martin Munoz-Lopez, Pedro J. Real, Angela Macia, Laura Sanchez, Gertrudis Ligero, Jose L. Garcia-Parez, Pablo Menendez;
Human induced pluripotent stem cells develop teratoma more efficiently and faster than human embryonic stem cells regardless the site of injection.
Stem Cells 28:1568-1570(2010)

PubMed=20736931; DOI=10.1038/mt.2010.179; PMCID=PMC2997587
Veronica Ramos-Mejia, Gustavo J. Melen Frajlich, Laura Sanchez, Ivan Gutierrez-Aranda, Gertrudis Ligero, Jose L. Cortes, Pedro J. Real, Clara Bueno, Pablo Menendez;
Nodal/activin signaling predicts human pluripotent stem cell lines prone to differentiate toward the hematopoietic lineage.
Mol. Ther. 18:2173-2181(2010)

PubMed=21295703; DOI=10.1016/j.cell.2010.12.032; PMCID=PMC3063454
Christoph Bock, Evangelos Kiskinis, Griet Verstappen, Hong-Cang Gu, Gabriella L. Boulting, Zachary D. Smith, Michael Johannes Ziller, Gist Fralley Croft, Mackenzie Weygandt Amoroso, Derek H. Oakley, Andreas Gnirke ...Show all 13 authors... , Kevin Carl Eggan, Alexander Meissner; Show fewer authors
Reference maps of human ES and iPS cell variation enable high-throughput characterization of pluripotent cell lines.
Cell 144:439-452(2011)

PubMed=21983960; DOI=10.1038/nmeth.1699; PMCID=PMC3432645
Douglas H. Phanstiel, Justin Brumbaugh, Craig D. Wenger, Shu-Lan Tian, Mitchell D. Probasco, Derek J. Bailey, Danielle L. Swaney, Mark A. Tervo, Jennifer M. Bolin, Victor Ruotti, Ron Stewart ...Show all 13 authors... , James Alexander Thomson, Joshua J. Coon; Show fewer authors
Proteomic and phosphoproteomic comparison of human ES and iPS cells.
Nat. Methods 8:821-827(2011)

PubMed=21936705; DOI=10.1089/scd.2011.0400
Veronica Ramos-Mejia, Agustin F. Fernandez, Veronica Ayllon, Pedro J. Real, Clara Bueno, Per Anderson, Francisco Martin, Mario Fernandez Fraga, Pablo Menendez;
Maintenance of human embryonic stem cells in mesenchymal stem cell-conditioned media augments hematopoietic specification.
Stem Cells Dev. 21:1549-1558(2012)

PubMed=22514597; DOI=10.1371/journal.pone.0030743; PMCID=PMC3326006
Christophe Sandt, Olivier Feraud, Noufissa Oudrhiri, Marie-Laure Bonnet, Marie-Claude Meunier, Yannick Valogne, Angelina Bertrand, Martine Raphael, Frank Griscelli, Ali G. Turhan, Paul Dumas, Annelise Bennaceur-Griscelli;
Identification of spectral modifications occurring during reprogramming of somatic cells.
PLoS ONE 7:e30743.1-e30743.7(2012)

PubMed=22802639; DOI=10.1073/pnas.1209979109; PMCID=PMC3411998
Masatoshi Kajiwara, Takashi Aoi, Keisuke Okita, Ryosuke Takahashi, Haruhisa Inoue, Naoya Takayama, Hiroshi Endo, Koji Eto, Junya Toguchida, Shinji Uemoto, Shinya Yamanaka;
Donor-dependent variations in hepatic differentiation from human-induced pluripotent stem cells.
Proc. Natl. Acad. Sci. U.S.A. 109:12538-12543(2012)

PubMed=23117585; DOI=10.1016/j.scr.2012.09.002; PMCID=PMC3590800
Barbara S. Mallon, Joshua G. Chenoweth, Kory R. Johnson, Rebecca S. Hamilton, Paul J. Tesar, Amarendra S. Yavatkar, Leonard J. Tyson, Kyeyoon Park, Kevin G. Chen, Yang-Cheng Fann, Ronald Davies Graham McKay;
StemCellDB: the human pluripotent stem cell database at the National Institutes of Health.
Stem Cell Res. 10:57-66(2013)

PubMed=24259714; DOI=10.1073/pnas.1319061110; PMCID=PMC3870695
Michiyo Koyanagi-Aoi, Mari Ohnuki, Kazutoshi Takahashi, Keisuke Okita, Hisashi Noma, Yuka Sawamura, Ito Teramoto, Megumi Narita, Yoshiko Sato, Tomoko Ichisaka, Naoki Amano ...Show all 17 authors... , Akira Watanabe, Asuka Morizane, Yasuhiro Yamada, Tosiya Sato, Jun Takahashi, Shinya Yamanaka; Show fewer authors
Differentiation-defective phenotypes revealed by large-scale analyses of human pluripotent stem cells.
Proc. Natl. Acad. Sci. U.S.A. 110:20569-20574(2013)

PubMed=27293150; DOI=10.1016/j.stemcr.2016.05.006; PMCID=PMC4944587
Nathan Salomonis, Phillip J. Dexheimer, Larsson Omberg, Robin Schroll, Stacy Bush, Jeffrey S. Huo, Lynn M. Schriml, Shannan Ho Sui, Mehdi Keddache, Christopher N. Mayhew, Shiva Kumar Shanmukhappa ...Show all 23 authors... , James M. Wells, Kenneth Daily, Shane Hubler, Yu-Liang Wang, Elias Thomas Zambidis, Adam A. Margolin, Winston Alexander Hide, Antonis K. Hatzopoulos, Punam Malik, Jose A. Cancelas, Bruce J. Aronow, Carolyn Lutzko; Show fewer authors
Integrated genomic analysis of diverse induced pluripotent stem cells from the Progenitor Cell Biology Consortium.
Stem Cell Reports 7:110-125(2016)

PubMed=27476965; DOI=10.1016/j.stem.2016.06.019
Masatoshi Nishizawa, Kazuhisa Chonabayashi, Masaki Nomura, Azusa Tanaka, Masahiro Nakamura, Azusa Inagaki, Misato Nishikawa, Ikue Takei, Akiko Oishi, Koji Tanabe, Mari Ohnuki ...Show all 18 authors... , Hidaka Yokota, Michiyo Koyanagi-Aoi, Keisuke Okita, Akira Watanabe, Akifumi Takaori-Kondo, Shinya Yamanaka, Yoshinori Yoshida; Show fewer authors
Epigenetic variation between human induced pluripotent stem cell lines is an indicator of differentiation capacity.
Cell Stem Cell 19:341-354(2016)

PubMed=27688775; DOI=10.1155/2016/3826249; PMCID=PMC5023833
Pratik K. Nagaria, Carine Robert, Tea Soon Park, Jeffrey S. Huo, Elias Thomas Zambidis, Feyruz V. Rassool;
High-fidelity reprogrammed human IPSCs have a high efficacy of DNA repair and resemble hESCs in their MYC transcriptional signature.
Stem Cells Int. 2016:3826249.1-3826249.14(2016)

PubMed=28435121; DOI=10.1016/j.jprot.2017.04.017
Faezeh Shekari, Hossein Nezari, Mehran Rezaei Larijani, Chia-Li Han, Hossein Baharvand, Yu-Ju Chen, Ghasem Hosseini Salekdeh;
Proteome analysis of human embryonic stem cells organelles.
J. Proteomics 162:108-118(2017)

PubMed=28445466; DOI=10.1038/nature22312; PMCID=PMC5427175
Florian T. Merkle, Sulagna Ghosh, Nolan Kamitaki, Jana Mitchell, Yishai Avior, Curtis Mello, Seva Kashin, Shila Mekhoubad, Dusko Ilic, Maura Charlton, Genevieve Saphier ...Show all 17 authors... , Robert E. Handsaker, Giulio Genovese, Shiran Bar, Nissim Benvenisty, Steven A. McCarroll, Kevin Carl Eggan; Show fewer authors
Human pluripotent stem cells recurrently acquire and expand dominant negative p53 mutations.
Nature 545:229-233(2017)

PubMed=28664172; DOI=10.1016/j.dib.2017.05.036; PMCID=PMC5480819
Faezeh Shekari, Hossein Nezari, Yu-Ju Chen, Hossein Baharvand, Ghasem Hosseini Salekdeh;
Data for whole and mitochondrial proteome of human embryonic stem cells.
Data Brief 13:371-376(2017)

PubMed=29246576; DOI=10.1016/j.scr.2017.08.004
Joan Domingo-Reines, Adolfo Lopez-Ornelas, Rosa Montes, Tamara Romero, Jose Luis Rodriguez-Llamas, Rolando Lara-Rodarte, Federico Gonzalez-Pozas, Veronica Ayllon, Pablo Menendez, Ivan Velasco, Veronica Ramos-Mejia;
Hoxa9 and EGFP reporter expression in human embryonic stem cells (hESC) as useful tools for studying human development.
Stem Cell Res. 25:286-290(2017)

PubMed=29861859; DOI=10.18632/oncotarget.25353; PMCID=PMC5982739
Alexandra V. Panova, Alexandra N. Bogomazova, Maria A. Lagarkova, Sergey L'vovich Kiselev;
Epigenetic reprogramming by naive conditions establishes an irreversible state of partial X chromosome reactivation in female stem cells.
Oncotarget 9:25136-25147(2018)

PubMed=30388422; DOI=10.1016/j.stem.2018.10.009
Tenneille E. Ludwig, Angela Kujak, Antonio Rauti, Steven Andrzejewski, Susan Langbehn, James Mayfield, Jacqueline Fuller, Yoshimi Yashiro, Yashushi Hara, Anita Bhattacharyya;
20 years of human pluripotent stem cell research: it all started with five lines.
Cell Stem Cell 23:644-648(2018)

PubMed=35805069; DOI=10.3390/cells11131984; PMCID=PMC9265327
Francisco Jose Molina-Ruiz, Clelia Introna, Georgina Bombau, Mireia Galofre, Josep Maria Canals;
Standardization of cell culture conditions and routine genomic screening under a quality management system leads to reduced genomic instability in hPSCs.
Cells 11:1984.1-1984.25(2022)

Cross-references
Cell line collections (Providers) WiCell; wa09
WiCell; wa09-cgmp-material
WiCell; wa09-matched-research
WiCell; wa09-pcbc
Cell line databases/resources CLO; CLO_0037313
CCRID; 3101HUMSCSP302
CCRID; 3101HUMSCSP307
hPSCreg; WAe009-A
IGRhCellID; H9%20p25-2
IGRhCellID; H9%20p34
LINCS_LDP; ES-1001
NIHhESC; NIHhESC-10-0062
SKIP; SKIP001452
SKIP; SKIP001935
TOKU-E; 4223
Anatomy/cell type resources BTO; BTO_0006062
Biological sample resources 4DN; 4DNSR9WBB58Z
BioSample; SAMN03471903
BioSamples; SAMEA7769668
ENCODE; ENCBS013BRF
ENCODE; ENCBS061KRP
ENCODE; ENCBS113LZP
ENCODE; ENCBS140HIH
ENCODE; ENCBS156LDX
ENCODE; ENCBS220TZB
ENCODE; ENCBS277KDR
ENCODE; ENCBS298AAA
ENCODE; ENCBS299AAA
ENCODE; ENCBS300AAA
ENCODE; ENCBS315DEY
ENCODE; ENCBS375GFI
ENCODE; ENCBS377MXB
ENCODE; ENCBS399JWQ
ENCODE; ENCBS410BMR
ENCODE; ENCBS417MAQ
ENCODE; ENCBS477SFO
ENCODE; ENCBS485PGF
ENCODE; ENCBS532LWE
ENCODE; ENCBS616QKE
ENCODE; ENCBS656LSW
ENCODE; ENCBS692FVF
ENCODE; ENCBS703ZDS
ENCODE; ENCBS741LLD
ENCODE; ENCBS757OPX
ENCODE; ENCBS769EPD
ENCODE; ENCBS808UWK
ENCODE; ENCBS853WXF
ENCODE; ENCBS883RFB
ENCODE; ENCBS996IWU
CRISP screens repositories BioGRID_ORCS_Cell_line; 1321
Encyclopedic resources Wikidata; Q27555433
Gene expression databases GEO; GSM239975
GEO; GSM288333
GEO; GSM288335
GEO; GSM288397
GEO; GSM347923
GEO; GSM383878
GEO; GSM383879
GEO; GSM384100
GEO; GSM500936
GEO; GSM569191
GEO; GSM569192
GEO; GSM579901
GEO; GSM579902
GEO; GSM603054
GEO; GSM603055
GEO; GSM605307
GEO; GSM605310
GEO; GSM605314
GEO; GSM605316
GEO; GSM605324
GEO; GSM616127
GEO; GSM616128
GEO; GSM616129
GEO; GSM627785
GEO; GSM637777
GEO; GSM665037
GEO; GSM667608
GEO; GSM667609
GEO; GSM667610
GEO; GSM667611
GEO; GSM667612
GEO; GSM667613
GEO; GSM667616
GEO; GSM667619
GEO; GSM667620
GEO; GSM667621
GEO; GSM667622
GEO; GSM667623
GEO; GSM667625
GEO; GSM667626
GEO; GSM667628
GEO; GSM667629
GEO; GSM667630
GEO; GSM667631
GEO; GSM667632
GEO; GSM667633
GEO; GSM667634
GEO; GSM667635
GEO; GSM667636
GEO; GSM667637
GEO; GSM667638
GEO; GSM667639
GEO; GSM667640
GEO; GSM667643
GEO; GSM669899
GEO; GSM669901
GEO; GSM670053
GEO; GSM674603
GEO; GSM706044
GEO; GSM706059
GEO; GSM706060
GEO; GSM706061
GEO; GSM706062
GEO; GSM706063
GEO; GSM706064
GEO; GSM706066
GEO; GSM706071
GEO; GSM706076
GEO; GSM755488
GEO; GSM755491
GEO; GSM816629
GEO; GSM856731
GEO; GSM860961
GEO; GSM860962
GEO; GSM860963
GEO; GSM862733
GEO; GSM927236
GEO; GSM997555
GEO; GSM997556
GEO; GSM997557
GEO; GSM1040243
GEO; GSM1040313
GEO; GSM1084832
GEO; GSM1084835
GEO; GSM1084943
GEO; GSM1084944
GEO; GSM1084992
GEO; GSM1085015
GEO; GSM1215278
GEO; GSM1215279
GEO; GSM1227088
GEO; GSM1489249
GEO; GSM1489460
GEO; GSM1589800
GEO; GSM1589812
GEO; GSM1589932
GEO; GSM1589944
GEO; GSM1658377
Proteomic databases PRIDE; PXD003903
PRIDE; PXD006271
Entry history
Entry creation06-Jun-2012
Last entry update10-Apr-2025
Version number41