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Cellosaurus SUM159PT (CVCL_5423)

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Cell line name SUM159PT
Synonyms SUM-159-PT; SUM-159PT; SUM 159PT; SUM-159; SUM 159; SUM159; 159 PT; 159PT
Accession CVCL_5423
Secondary accession CVCL_5590
Resource Identification Initiative To cite this cell line use: SUM159PT (RRID:CVCL_5423)
Comments Group: Triple negative breast cancer (TNBC) cell line.
Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE).
Part of: JWGray breast cancer cell line panel.
Doubling time: 21.73 hours (JWGray panel).
Microsatellite instability: Stable (MSS) (PubMed=15677628).
Omics: Genomics; DNA methylation analysis.
Omics: Genomics; Whole exome sequencing.
Omics: Phenotyping; CRISPR screening.
Omics: Proteomics; Expression; Reverse-phase protein array.
Omics: Transcriptomics; Microarray.
Omics: Transcriptomics; miRNA profiling; Microarray.
Omics: Transcriptomics; RNAseq.
Omics: Variations; Array-based CGH.
Omics: Variations; SNP array analysis.
Misspelling: SUM152; Note=Occasionally.
Derived from site: In situ; Breast; UBERON=UBERON_0000310.
Sequence variations
HLA typing Source: PubMed=25960936
Class I
HLA-AA*02:01,24:02
HLA-BB*15:01,51:01
HLA-CC*03:03,15:02

Source: PubMed=26589293
Class I
HLA-AA*02:01,24:02
HLA-BB*15:01,51:01
HLA-CC*03:03,15:02
Disease Breast pleomorphic carcinoma (NCIt: C5161)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Hierarchy Children:
CVCL_RA93 (SUM159PT shPARG)CVCL_C9AN (SUM159R)
Sex of cell Female
Age at sampling 71Y
Category Cancer cell line
STR profile Source(s): DepMap=ACH-001391; PubMed=25877200; PubMed=28889351

Markers:
AmelogeninX
CSF1PO10,11 (DepMap=ACH-001391)
11 (PubMed=25877200; PubMed=28889351)
D3S135811,16 (PubMed=25877200)
11,16,17 (DepMap=ACH-001391)
D5S81811
D7S82010
D8S117911,13
D13S31712
D16S53911
D18S5112,14 (PubMed=25877200)
12,14,15 (DepMap=ACH-001391)
D21S1128
FGA21,22
Penta D9,11
Penta E17
TH016,7
TPOX8,11
vWA16

Run an STR similarity search on this cell line
Web pages Info; Pawefish; -; https://www.cellosaurus.org/pawefish/BreastCellLineDescriptions/SUM-159.html
Info; Synapse; JWGray panel; https://www.synapse.org/#!Synapse:syn2346643/wiki/62255
Provider; BioIVT/Asterand; -; https://bioivt.com/sum-breast-cancer-cell-lines/
Publications

PubMed=10424408; DOI=10.1023/A:1006135331912
Kathleen M. Woods Ignatoski, Stephen P. Ethier;
Constitutive activation of pp125fak in newly isolated human breast cancer cell lines.
Breast Cancer Res. Treat. 54:173-182(1999)

PubMed=10604729; DOI=10.1038/sj.bjc.6695007; PMCID=PMC2362964
Farahnaz Forozan, Robin Veldman, Cheryl A. Ammerman, Nasser Z. Parsa, Anne H. Kallioniemi, Olli-Pekka Kallioniemi, Stephen P. Ethier;
Molecular cytogenetic analysis of 11 new breast cancer cell lines.
Br. J. Cancer 81:1328-1334(1999)

PubMed=10969801
Farahnaz Forozan, Eija H. Mahlamaki, Outi Monni, Yi-Dong Chen, Robin Veldman, Yuan Jiang, Gerald C. Gooden, Stephen P. Ethier, Anne H. Kallioniemi, Olli-Pekka Kallioniemi;
Comparative genomic hybridization analysis of 38 breast cancer cell lines: a basis for interpreting complementary DNA microarray data.
Cancer Res. 60:4519-4525(2000)

PubMed=11044355; DOI=10.1054/bjoc.2000.1458; PMCID=PMC2408781
Jeffrey M. Davidson, Kylie Louise Gorringe, Suet-Feung Chin, Beatrice Orsetti, C. Besret, Celine Courtay-Cahen, Ian Roberts, Charles Theillet, Carlos Caldas, Paul A.W. Edwards;
Molecular cytogenetic analysis of breast cancer cell lines.
Br. J. Cancer 83:1309-1317(2000)

PubMed=12800145; DOI=10.1002/gcc.10218
Jose Adelaide, Huai-En Huang, Anne Murati, Amber E. Alsop, Beatrice Orsetti, Marie-Joelle Mozziconacci, Cornel Popovici, Christophe Ginestier, Anne Letessier, Celine Basset, Celine Courtay-Cahen ...Show all 16 authors... , Jocelyne Jacquemier, Charles Theillet, Daniel Birnbaum, Paul A.W. Edwards, Max Chaffanet; Show fewer authors
A recurrent chromosome translocation breakpoint in breast and pancreatic cancer cell lines targets the neuregulin/NRG1 gene.
Genes Chromosomes Cancer 37:333-345(2003)

PubMed=15677628; DOI=10.1093/carcin/bgi032
Kylie Louise Gorringe, Suet-Feung Chin, Paul D.P. Pharoah, Joanne M. Staines, Carla Oliveira, Paul A.W. Edwards, Carlos Caldas;
Evidence that both genetic instability and selection contribute to the accumulation of chromosome alterations in cancer.
Carcinogenesis 26:923-930(2005)

PubMed=16397213; DOI=10.1158/0008-5472.CAN-05-2853
Fons Elstrodt, Antoinette Hollestelle, Jord H.A. Nagel, Michael Gorin, Marijke Wasielewski, Ans M.W. van den Ouweland, Sofia Diana Merajver, Stephen P. Ethier, Mieke Schutte;
BRCA1 mutation analysis of 41 human breast cancer cell lines reveals three new deleterious mutants.
Cancer Res. 66:41-45(2006)

PubMed=16541312; DOI=10.1007/s10549-006-9186-z
Marijke Wasielewski, Fons Elstrodt, Jan G.M. Klijn, Els M.J.J. Berns, Mieke Schutte;
Thirteen new p53 gene mutants identified among 41 human breast cancer cell lines.
Breast Cancer Res. Treat. 99:97-101(2006)

PubMed=17157791; DOI=10.1016/j.ccr.2006.10.008; PMCID=PMC2730521
Richard M. Neve, Koei Chin, Jane Fridlyand, Jennifer Yeh, Frederick L. Baehner, Tea Fevr, Laura Clark, Nora Bayani, Jean-Philippe Coppe, Frances Tong, Terry Speed ...Show all 27 authors... , Paul T. Spellman, Sandy DeVries, Anna Lapuk, Nick J. Wang, Wen-Lin Kuo, Jackie L. Stilwell, Daniel Pinkel, Donna G. Albertson, Frederic M. Waldman, Frank McCormick, Robert Brent Dickson, Michael D. Johnson, Marc E. Lippman, Stephen P. Ethier, Adi F. Gazdar, Joe W. Gray; Show fewer authors
A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes.
Cancer Cell 10:515-527(2006)

DOI=10.25904/1912/1434
Brian J. Morrison;
Breast cancer stem cells: tumourspheres and implications for therapy.
Thesis PhD (2010); Griffith University; Brisbane; Australia

PubMed=19593635; DOI=10.1007/s10549-009-0460-8
Antoinette Hollestelle, Jord H.A. Nagel, Marcel Smid, Suzanne Lam, Fons Elstrodt, Marijke Wasielewski, Ser Sue Ng, Pim J. French, Justine K. Peeters, Marieke J. Rozendaal, Muhammad Riaz ...Show all 26 authors... , Daphne G. Koopman, Timo L.M. ten Hagen, Bertie H.C.G.M. de Leeuw, Ellen C. Zwarthoff, Amina F.A.S. Teunisse, Peter J. van der Spek, Jan G.M. Klijn, Winand N.M. Dinjens, Stephen P. Ethier, Hans Cornelius Clevers, Aart G. Jochemsen, Michael A. den Bakker, John A. Foekens, John W.M. Martens, Mieke Schutte; Show fewer authors
Distinct gene mutation profiles among luminal-type and basal-type breast cancer cell lines.
Breast Cancer Res. Treat. 121:53-64(2010)

PubMed=21778573; DOI=10.3233/BD-2010-0307; PMCID=PMC3532890
Kathryn J. Chavez, Sireesha V. Garimella, Stanley Lipkowitz;
Triple negative breast cancer cell lines: one tool in the search for better treatment of triple negative breast cancer.
Breast Dis. 32:35-48(2010)

PubMed=23151021; DOI=10.1186/1471-2164-13-619; PMCID=PMC3546428
Anita Grigoriadis, Alan Mackay, Elodie Noel, Pei-Jun Wu, Rachael Natrajan, Jessica Frankum, Jorge Sergio Reis-Filho, Andrew Tutt;
Molecular characterisation of cell line models for triple-negative breast cancers.
BMC Genomics 13:619.1-619.14(2012)

PubMed=23401782; DOI=10.1155/2013/872743; PMCID=PMC3562669
Nandita Barnabas, Dalia Cohen;
Phenotypic and molecular characterization of MCF10DCIS and SUM breast cancer cell lines.
Int. J. Breast Cancer 2013:872743.1-872743.16(2013)

PubMed=23601657; DOI=10.1186/bcr3415; PMCID=PMC3672661
Muhammad Riaz, Marijn T.M. van Jaarsveld, Antoinette Hollestelle, Wendy J.C. Prager-van der Smissen, Anouk A.J. Heine, Antonius W.M. Boersma, Jing-Jing Liu, Jean C.A. Helmijr, Bahar Ozturk, Marcel Smid, Erik A.C. Wiemer ...Show all 13 authors... , John A. Foekens, John W.M. Martens; Show fewer authors
miRNA expression profiling of 51 human breast cancer cell lines reveals subtype and driver mutation-specific miRNAs.
Breast Cancer Res. 15:R33.1-R33.17(2013)

PubMed=24162158; DOI=10.1007/s10549-013-2743-3; PMCID=PMC3832776
Aleix Prat, Olga Karginova, Joel S. Parker, Cheng Fan, Xia-Ping He, Lisa M. Bixby, J. Chuck Harrell, Erick Roman, Barbara Adamo, Melissa A. Troester, Charles M. Perou;
Characterization of cell lines derived from breast cancers and normal mammary tissues for the study of the intrinsic molecular subtypes.
Breast Cancer Res. Treat. 142:237-255(2013)

PubMed=24176112; DOI=10.1186/gb-2013-14-10-r110; PMCID=PMC3937590
Anneleen Daemen, Obi L. Griffith, Laura M. Heiser, Nicholas J. Wang, Oana M. Enache, Zachary Sanborn, Francois Pepin, Steffen Durinck, James E. Korkola, Malachi Griffith, Joe S. Hur ...Show all 27 authors... , Nam Huh, Jongsuk Chung, Leslie Cope, Mary Jo Fackler, Christopher Benedict Umbricht, Saraswati Sukumar, Pankaj Seth, Vikas P. Sukhatme, Lakshmi R. Jakkula, Yi-Ling Lu, Gordon B. Mills, Raymond J. Cho, Eric A. Collisson, Laura J. van 't Veer, Paul T. Spellman, Joe W. Gray; Show fewer authors
Modeling precision treatment of breast cancer.
Genome Biol. 14:R110.1-R110.14(2013)

PubMed=25960936; DOI=10.4161/21624011.2014.954893; PMCID=PMC4355981
Sebastian Boegel, Martin Lower, Thomas Bukur, Ugur Sahin, John C. Castle;
A catalog of HLA type, HLA expression, and neo-epitope candidates in human cancer cell lines.
OncoImmunology 3:e954893.1-e954893.12(2014)

PubMed=25485619; DOI=10.1038/nbt.3080
Christiaan Klijn, Steffen Durinck, Eric W. Stawiski, Peter M. Haverty, Zhao-Shi Jiang, Han-Bin Liu, Jeremiah Degenhardt, Oleg Mayba, Florian Gnad, Jin-Feng Liu, Gregoire Pau ...Show all 30 authors... , Jens Reeder, Yi Cao, Kiran Mukhyala, Suresh K. Selvaraj, Ma-Mie Yu, Gregory J. Zynda, Matthew J. Brauer, Thomas D. Wu, Robert Clifford Gentleman, Gerard Manning, Robert L. Yauch, Richard Bourgon, David Stokoe, Zora Modrusan, Richard M. Neve, Frederic J. de Sauvage, Jeffrey Settleman, Somasekar Seshagiri, Ze-Min Zhang; Show fewer authors
A comprehensive transcriptional portrait of human cancer cell lines.
Nat. Biotechnol. 33:306-312(2015)

PubMed=25877200; DOI=10.1038/nature14397
Ma-Mie Yu, Suresh K. Selvaraj, May M.Y. Liang-Chu, Sahar Aghajani, Matthew Busse, Jean Yuan, Genee Lee, Franklin V. Peale, Christiaan Klijn, Richard Bourgon, Joshua S. Kaminker, Richard M. Neve;
A resource for cell line authentication, annotation and quality control.
Nature 520:307-311(2015)

PubMed=26589293; DOI=10.1186/s13073-015-0240-5; PMCID=PMC4653878
Jelle Scholtalbers, Sebastian Boegel, Thomas Bukur, Marius Byl, Sebastian Goerges, Patrick Sorn, Martin Loewer, Ugur Sahin, John C. Castle;
TCLP: an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression.
Genome Med. 7:118.1-118.7(2015)

PubMed=26735014; DOI=10.1038/nature16508; PMCID=PMC4854653
Shao-Kun Shu, Charles Y. Lin, Hou-Sheng Hansen He, Robert M. Witwicki, Doris Priscilla Tabassum, Justin M. Roberts, Michalina Janiszewska, Sung Jin Huh, Yi Liang, Jeremy Ryan, Ernest Doherty ...Show all 39 authors... , Hisham Mohammed, Hao Guo, Daniel G. Stover, Muhammad B. Ekram, Jonathan Brown, Clive D'Santos, Ian Elliott Krop, Deborah Dillon, Michael R. McKeown, Christopher Ott, Jun Qi, Min Ni, Prakash K. Rao, Melissa Duarte, Shwu-Yuan Wu, Cheng-Ming Chiang, Lars Anders, Richard Allen Young, Eric Winer, Anthony George Letai, William T. Barry, Jason S. Carroll, Henry Long, Myles A. Brown, Xiao-Le Shirley Liu, Clifford A. Meyer, James E. Bradner, Kornelia Polyak; Show fewer authors
Response and resistance to BET bromodomain inhibitors in triple-negative breast cancer.
Nature 529:413-417(2016)

PubMed=28889351; DOI=10.1007/s10549-017-4496-x
Jodi M. Saunus, Chanel E. Smart, Jamie R. Kutasovic, Rebecca L. Johnston, Priyakshi Kalita-de Croft, Mariska Miranda, Esdy N. Rozali, Ana Cristina Vargas, Lynne E. Reid, Eva Lorsy, Sibylle Cocciardi ...Show all 23 authors... , Tatjana Seidens, Amy Ellen McCart Reed, Andrew J. Dalley, Leesa F. Wockner, Julie Johnson, Debina Sarkar, Marjan E. Askarian-Amiri, Peter T. Simpson, Kum Kum Khanna, Georgia Chenevix-Trench, Fares Al-Ejeh, Sunil R. Lakhani; Show fewer authors
Multidimensional phenotyping of breast cancer cell lines to guide preclinical research.
Breast Cancer Res. Treat. 167:289-301(2018)

PubMed=32416067; DOI=10.1016/j.molcel.2020.04.027; PMCID=PMC7306005
Shao-Kun Shu, Hua-Jun Wu, Jennifer Y. Ge, Rhamy Zeid, Isaac S. Harris, Bojana Jovanovic, Katherine Murphy, Bin-Bin Wang, Xin-Tao Qiu, Jennifer E. Endress, Jaime Reyes ...Show all 39 authors... , Klothilda Lim, Alba Font-Tello, Sudeepa Syamala, Teng-Fei Xiao, Chandra Sekhar Reddy Chilamakuri, Evangelia K. Papachristou, Clive D'Santos, Jayati Anand, Kunihiko Hinohara, Wei Li, Thomas O. McDonald, Adrienne Luoma, Rebecca J. Modiste, Quang-De Nguyen, Brittany Michel, Paloma Cejas, Cigall Kadoch, Jacob D. Jaffe, Kai W. Wucherpfennig, Jun Qi, Xiao-Le Shirley Liu, Henry Long, Myles A. Brown, Jason S. Carroll, Joan Siefert Brugge, James E. Bradner, Franziska Michor, Kornelia Polyak; Show fewer authors
Synthetic lethal and resistance interactions with BET bromodomain inhibitors in triple-negative breast cancer.
Mol. Cell 78:1096-1113.e8(2020)

PubMed=32715085; DOI=10.1038/s41523-020-0173-z; PMCID=PMC7374090
Stephen P. Ethier, Stephen T. Guest, Elizabeth Garrett-Mayer, Kent Armeson, Robert C. Wilson, Kathryn Duchinski, Daniel Couch, Joe W. Gray, Christiana S. Kappler;
Development and implementation of the SUM breast cancer cell line functional genomics knowledge base.
NPJ Breast Cancer 6:30.1-30.14(2020)

PubMed=34320349; DOI=10.1016/j.celrep.2021.109441; PMCID=PMC8333195
Fleur Jochems, Bram Thijssen, Giulia De Conti, Robin Jansen, Ziva Pogacar, Kelvin Groot, Li-Qin Wang, Arnout Schepers, Cun Wang, Hao-Jie Jin, Roderick L. Beijersbergen ...Show all 14 authors... , Rodrigo Leite de Oliveira, Lodewyk F.A. Wessels, Rene Bernards; Show fewer authors
The cancer SENESCopedia: a delineation of cancer cell senescence.
Cell Rep. 36:109441.1-109441.22(2021)

PubMed=35042871; DOI=10.1038/s41523-021-00379-6; PMCID=PMC8766434
Charlotte Rypens, Francois Bertucci, Pascal Finetti, Fredika M. Robertson, Sandra V. Fernandez, Naoto Tada Ueno, Wendy A. Woodward, Kenneth Van Golen, Peter Vermeulen, Luc Dirix, Patrice Viens ...Show all 15 authors... , Daniel Birnbaum, Gayathri R. Devi, Massimo Cristofanilli, Steven Van Laere; Show fewer authors
Comparative transcriptional analyses of preclinical models and patient samples reveal MYC and RELA driven expression patterns that define the molecular landscape of IBC.
NPJ Breast Cancer 8:12.1-12.12(2022)

Cross-references
Cell line collections (Providers) CLS; 305116
Cell line databases/resources CLO; CLO_0009918
cancercelllines; CVCL_5423
Cell_Model_Passport; SIDM01452
DepMap; ACH-001391
LINCS_HMS; 51083
LINCS_LDP; LCL-2068
SLKBase; 256
Anatomy/cell type resources BTO; BTO_0004928
Biological sample resources BioSample; SAMN03472960
CRISP screens repositories BioGRID_ORCS_Cell_line; 1394
Chemistry resources ChEMBL-Cells; CHEMBL4483124
ChEMBL-Targets; CHEMBL4483269
PharmacoDB; SUM159PT_1510_2019
PubChem_Cell_line; CVCL_5423
Encyclopedic resources Wikidata; Q54970841
Experimental variables resources EFO; EFO_0001241
Gene expression databases ArrayExpress; E-MTAB-2706
ArrayExpress; E-MTAB-11134
ArrayExpress; E-TABM-157
GEO; GSM75170
GEO; GSM217601
GEO; GSM412074
GEO; GSM412089
GEO; GSM412092
GEO; GSM412105
GEO; GSM412114
GEO; GSM412117
GEO; GSM421890
GEO; GSM474278
GEO; GSM474279
GEO; GSM476481
GEO; GSM476482
GEO; GSM476483
GEO; GSM478318
GEO; GSM478319
GEO; GSM478323
GEO; GSM478324
GEO; GSM844706
GEO; GSM844707
GEO; GSM847434
GEO; GSM847501
GEO; GSM967817
GEO; GSM967822
GEO; GSM1008917
GEO; GSM1053735
GEO; GSM1172993
GEO; GSM1214567
GEO; GSM1401652
GEO; GSM3145737
Polymorphism and mutation databases Cosmic; 904389
Cosmic; 1046944
Cosmic; 1136380
Cosmic; 1287924
Cosmic; 1289412
Cosmic; 1460240
IARC_TP53; 24342
Progenetix; CVCL_5423
Sequence databases EGA; EGAS00001000610
Entry history
Entry creation04-Apr-2012
Last entry update10-Apr-2025
Version number41