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Cellosaurus HAP1 KDM1A (-) 1 (CVCL_RK67)

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Cell line name HAP1 KDM1A (-) 1
Synonyms HZGHC000509c010; KDM1A knockout cell line 10bp deletion; HAP1-LSD1-
Accession CVCL_RK67
Resource Identification Initiative To cite this cell line use: HAP1 KDM1A (-) 1 (RRID:CVCL_RK67)
Comments Group: Haploid karyotype cell line.
Knockout cell: Method=CRISPR/Cas9; HGNC; HGNC:29079; KDM1A.
Omics: Transcriptomics; RNAseq.
Derived from site: In situ; Bone marrow; UBERON=UBERON_0002371.
Sequence variations
  • Gene fusion; HGNC; HGNC:76; ABL1 + HGNC; HGNC:1014; BCR; Name(s)=BCR-ABL1, BCR-ABL; Note=BCR exon 13 fused to ABL1 exon 2 (b2a2 transcript) (from parent cell line).
  • Mutation; HGNC; HGNC:11998; TP53; Simple; p.Ser215Gly (c.643A>G); ClinVar=VCV000265337; Zygosity=Hemizygous (from parent cell line).
Disease Chronic myelogenous leukemia, BCR-ABL1 positive (NCIt: C3174)
Chronic myeloid leukemia (ORDO: Orphanet_521)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Hierarchy Parent: CVCL_Y019 (HAP1)
Sex of cell Male
Age at sampling 40Y
Category Cancer cell line
Publications

PubMed=29205263; DOI=10.1111/bjh.14983
Jurgen Sonnemann, Miriam Zimmermann, Christian Marx, Franziska Ebert, Sabine Becker, Marie-Luise Lauterjung, James F. Beck;
LSD1 (KDM1A)-independent effects of the LSD1 inhibitor SP2509 in cancer cells.
Br. J. Haematol. 183:494-497(2018)

PubMed=31659326; DOI=10.1038/s41592-019-0614-5
Arne H. Smits, Frederik Ziebell, Gerard Joberty, Nico Zinn, William F. Mueller, Sandra Clauder-Munster, Dirk Eberhard, Maria Falth Savitski, Paola Grandi, Petra Jakob, Anne-Marie Michon ...Show all 18 authors... , Hanice Sun, Karen Tessmer, Tilmann Burckstummer, Marcus Bantscheff, Lars M. Steinmetz, Gerard Drewes, Wolfgang Huber; Show fewer authors
Biological plasticity rescues target activity in CRISPR knock outs.
Nat. Methods 16:1087-1093(2019)

Cross-references
Cell line collections (Providers) Horizon_Discovery; HZGHC000509c010
Encyclopedic resources Wikidata; Q54875918
Gene expression databases ArrayExpress; E-MTAB-7061
Proteomic databases PRIDE; PXD010335
Entry history
Entry creation05-Mar-2018
Last entry update10-Apr-2025
Version number14