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Cellosaurus PSB-D (CVCL_D5H0)

[Text version]
Cell line name PSB-D
Synonyms PSBD
Accession CVCL_D5H0
Resource Identification Initiative To cite this cell line use: PSB-D (RRID:CVCL_D5H0)
Comments Group: Plant cell line.
Characteristics: Grown in darkness (ABRC).
Characteristics: Can be genetically transformed with Agrobacterium (PubMed=35258835).
Characteristics: Can be used to prepare protoplasts (PubMed=17947977).
Omics: Proteomics.
Omics: Proteomics; PTM; Phosphorylation.
Omics: Proteomics; PTM; S-sulfenylation.
Omics: Transcriptomics; Microarray.
Omics: Transcriptomics; RNAseq.
Derived from site: In situ; Stem; PO=PO_0009047.
Species of origin Arabidopsis thaliana (Mouse-ear cress) (NCBI Taxonomy: 3702)
Breed/subspecies: Cultivar Landsberg erecta.
Hierarchy Parent: CVCL_D5GY (MM2d)
Category Spontaneously immortalized cell line
Web pages Provider; ABRC; CCL84840; https://abrc.osu.edu/stocks/282
Publications

PubMed=17947977; DOI=10.1038/nprot.2007.360
Yan-Song Miao, Li-Wen Jiang;
Transient expression of fluorescent fusion proteins in protoplasts of suspension cultured cells.
Nat. Protoc. 2:2348-2353(2007)

PubMed=21720954; DOI=10.1007/978-1-61779-154-3_11
Jelle Van Leene, Dominique Eeckhout, Geert Persiau, Eveline Van De Slijke, Jan Geerinck, Gert Van Isterdael, Erwin Witters, Geert De Jaeger;
Isolation of transcription factor complexes from Arabidopsis cell suspension cultures by tandem affinity purification.
Methods Mol. Biol. 754:195-218(2011)

PubMed=24453163; DOI=10.1104/pp.113.229617; PMCID=PMC3938607
Aurine Verkest, Thomas Abeel, Ken S. Heyndrickx, Jelle Van Leene, Christa Lanz, Eveline Van De Slijke, Nancy De Winne, Dominique Eeckhout, Geert Persiau, Frank Van Breusegem, Dirk Inze ...Show all 13 authors... , Klaas Vandepoele, Geert De Jaeger; Show fewer authors
A generic tool for transcription factor target gene discovery in Arabidopsis cell suspension cultures based on tandem chromatin affinity purification.
Plant Physiol. 164:1122-1133(2014)

PubMed=25521792; DOI=10.1038/nprot.2014.199
Jelle Van Leene, Dominique Eeckhout, Bernard Cannoot, Nancy De Winne, Geert Persiau, Eveline Van De Slijke, Leen Vercruysse, Maarten Dedecker, Aurine Verkest, Klaas Vandepoele, Lennart Martens ...Show all 14 authors... , Erwin Witters, Kris Gevaert, Geert De Jaeger; Show fewer authors
An improved toolbox to unravel the plant cellular machinery by tandem affinity purification of Arabidopsis protein complexes.
Nat. Protoc. 10:169-187(2015)

PubMed=26187819; DOI=10.1186/s12864-015-1753-4; PMCID=PMC4506601
Li-Ling Lin, Chia-Lang Hsu, Chia-Wei Hu, Shiao-Yun Ko, Hsu-Liang Hsieh, Hsuan-Cheng Huang, Hsueh-Fen Juan;
Integrating phosphoproteomics and bioinformatics to study brassinosteroid-regulated phosphorylation dynamics in Arabidopsis.
BMC Genomics 16:533.1-533.17(2015)

PubMed=30833711; DOI=10.1038/s41477-019-0378-z
Jelle Van Leene, Chao Han, Astrid Gadeyne, Dominique Eeckhout, Caroline Matthijs, Bernard Cannoot, Nancy De Winne, Geert Persiau, Eveline Van De Slijke, Brigitte Van de Cotte, Elisabeth Stes ...Show all 18 authors... , Michiel Van Bel, Veronique Storme, Francis Impens, Kris Gevaert, Klaas Vandepoele, Ive De Smet, Geert De Jaeger; Show fewer authors
Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.
Nat. Plants 5:316-327(2019)

PubMed=31578252; DOI=10.1073/pnas.1906768116; PMCID=PMC6800386
Jing-Jing Huang, Patrick Willems, Bo Wei, Cai-Ping Tian, Renan B. Ferreira, Nandita Bodra, Santiago Agustin Martinez Gache, Khadija Wahni, Keke Liu, Didier Vertommen, Kris Gevaert ...Show all 16 authors... , Kate S. Carroll, Marc C.E. Van Montagu, Jing Yang, Frank Van Breusegem, Joris Messens; Show fewer authors
Mining for protein S-sulfenylation in Arabidopsis uncovers redox-sensitive sites.
Proc. Natl. Acad. Sci. U.S.A. 116:21256-21261(2019)

PubMed=35258835; DOI=10.1007/978-1-0716-2164-6_15
Ward Decaestecker, Norbert Bollier, Rafael Andrade Buono, Moritz K. Nowack, Thomas B. Jacobs;
Protoplast preparation and fluorescence-activated cell sorting for the evaluation of targeted mutagenesis in plant cells.
Methods Mol. Biol. 2464:205-221(2022)

PubMed=35657526; DOI=10.1007/978-1-0716-2469-2_19
Zhi-Cheng Zhang, Evy Timmerman, Francis Impens, Frank Van Breusegem;
Characterization of RBPome in oxidative stress conditions.
Methods Mol. Biol. 2526:259-275(2022)

Cross-references
Encyclopedic resources Wikidata; Q127383960
Gene expression databases ArrayExpress; E-MTAB-3019
ArrayExpress; E-MTAB-3046
ArrayExpress; E-MTAB-3754
ArrayExpress; E-MTAB-3915
ArrayExpress; E-MTAB-6513
ArrayExpress; E-MTAB-7761
GEO; GSE48793
GEO; GSE53422
Proteomic databases PRIDE; PXD001473
PRIDE; PXD001562
PRIDE; PXD008355
PRIDE; PXD023022
PRIDE; PXD028534
PRIDE; PXD036285
Entry history
Entry creation02-May-2024
Last entry update10-Apr-2025
Version number3