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Cellosaurus PSB-D (CVCL_D5H0)

[Text version]
Cell line name PSB-D
Synonyms PSBD
Accession CVCL_D5H0
Resource Identification Initiative To cite this cell line use: PSB-D (RRID:CVCL_D5H0)
Comments Group: Plant cell line.
Characteristics: Grown in darkness (ABRC).
Characteristics: Can be genetically transformed with Agrobacterium (PubMed=35258835).
Characteristics: Can be used to prepare protoplasts (PubMed=17947977).
Omics: Deep phosphoproteome analysis.
Omics: Deep proteome analysis.
Omics: S-sulfenylation analysis by proteomics.
Omics: Transcriptome analysis by microarray.
Omics: Transcriptome analysis by RNAseq.
Derived from site: In situ; Stem.
Species of origin Arabidopsis thaliana (Mouse-ear cress) (NCBI Taxonomy: 3702)
Breed/subspecies: Cultivar Landsberg erecta.
Hierarchy Parent: CVCL_D5GY (MM2d)
Category Spontaneously immortalized cell line
Web pages https://abrc.osu.edu/stocks/282
Publications

PubMed=17947977; DOI=10.1038/nprot.2007.360
Miao Y.-S., Jiang L.-W.
Transient expression of fluorescent fusion proteins in protoplasts of suspension cultured cells.
Nat. Protoc. 2:2348-2353(2007)

PubMed=21720954; DOI=10.1007/978-1-61779-154-3_11
Van Leene J., Eeckhout D., Persiau G., Van De Slijke E., Geerinck J., Van Isterdael G., Witters E., De Jaeger G.
Isolation of transcription factor complexes from Arabidopsis cell suspension cultures by tandem affinity purification.
Methods Mol. Biol. 754:195-218(2011)

PubMed=24453163; DOI=10.1104/pp.113.229617
Verkest A., Abeel T., Heyndrickx K.S., Van Leene J., Lanz C., Van De Slijke E., De Winne N., Eeckhout D., Persiau G., Van Breusegem F., Inze D., Vandepoele K., De Jaeger G.
A generic tool for transcription factor target gene discovery in Arabidopsis cell suspension cultures based on tandem chromatin affinity purification.
Plant Physiol. 164:1122-1133(2014)

PubMed=25521792; DOI=10.1038/nprot.2014.199
Van Leene J., Eeckhout D., Cannoot B., De Winne N., Persiau G., Van De Slijke E., Vercruysse L., Dedecker M., Verkest A., Vandepoele K., Martens L., Witters E., Gevaert K., De Jaeger G.
An improved toolbox to unravel the plant cellular machinery by tandem affinity purification of Arabidopsis protein complexes.
Nat. Protoc. 10:169-187(2015)

PubMed=26187819; DOI=10.1186/s12864-015-1753-4
Lin L.-L., Hsu C.-L., Hu C.-W., Ko S.-Y., Hsieh H.-L., Huang H.-C., Juan H.-F.
Integrating phosphoproteomics and bioinformatics to study brassinosteroid-regulated phosphorylation dynamics in Arabidopsis.
BMC Genomics 16:533.1-533.17(2015)

PubMed=30833711; DOI=10.1038/s41477-019-0378-z
Van Leene J., Han C., Gadeyne A., Eeckhout D., Matthijs C., Cannoot B., De Winne N., Persiau G., Van De Slijke E., Van de Cotte B., Stes E., Van Bel M., Storme V., Impens F., Gevaert K., Vandepoele K., De Smet I., De Jaeger G.
Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.
Nat. Plants 5:316-327(2019)

PubMed=31578252; DOI=10.1073/pnas.1906768116
Huang J.-J., Willems P., Wei B., Tian C.-P., Ferreira R.B., Bodra N., Martinez Gache S.A., Wahni K., Liu K., Vertommen D., Gevaert K., Carroll K.S., Van Montagu M.C.E., Yang J., Van Breusegem F., Messens J.
Mining for protein S-sulfenylation in Arabidopsis uncovers redox-sensitive sites.
Proc. Natl. Acad. Sci. U.S.A. 116:21256-21261(2019)

PubMed=35258835; DOI=10.1007/978-1-0716-2164-6_15
Decaestecker W., Bollier N., Buono R.A., Nowack M.K., Jacobs T.B.
Protoplast preparation and fluorescence-activated cell sorting for the evaluation of targeted mutagenesis in plant cells.
Methods Mol. Biol. 2464:205-221(2022)

PubMed=35657526; DOI=10.1007/978-1-0716-2469-2_19
Zhang Z.-C., Timmerman E., Impens F., Van Breusegem F.
Characterization of RBPome in oxidative stress conditions.
Methods Mol. Biol. 2526:259-275(2022)

Cross-references
Gene expression databases ArrayExpress; E-MTAB-3019
ArrayExpress; E-MTAB-3046
ArrayExpress; E-MTAB-3754
ArrayExpress; E-MTAB-3915
ArrayExpress; E-MTAB-6513
ArrayExpress; E-MTAB-7761
GEO; GSE48793
GEO; GSE53422
Proteomic databases PRIDE; PXD001473
PRIDE; PXD001562
PRIDE; PXD008355
PRIDE; PXD023022
PRIDE; PXD028534
PRIDE; PXD036285
Entry history
Entry creation02-May-2024
Last entry update02-May-2024
Version number1