| Cell line name |
JN-DSRCT-SLFN11-KO |
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| Accession |
CVCL_C6N7 |
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| Resource Identification Initiative |
To cite this cell line use: JN-DSRCT-SLFN11-KO (RRID:CVCL_C6N7) |
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| Comments |
Population: Japanese.
Knockout cell: Method=CRISPR/Cas9; HGNC; 26633; SLFN11.
Derived from site: Metastatic; Pleural effusion; UBERON=UBERON_0000175. |
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| Sequence variations |
- Gene fusion; HGNC; 3508; EWSR1 + HGNC; 12796; WT1; Name(s)=EWSR1-WT1, EWS-WT1; Note=EWSR1 Ex10-WT1 Ex8 fusion (from parent cell line).
- Mutation; HGNC; 2348; CREBBP; Simple; p.Arg1443Alafs*11; Zygosity=Unspecified (from parent cell line).
- Mutation; HGNC; 4172; GATA3; Simple; p.Arg367Ter (c.1099C>T); ClinVar=VCV000016626; Zygosity=Unspecified (from parent cell line).
- Mutation; HGNC; 9884; RB1; Simple; p.Arg621Ser (c.1861C>A); ClinVar=VCV000135120; Zygosity=Unspecified (from parent cell line).
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| Disease |
Childhood desmoplastic small round cell tumor (NCIt: C27372)
Desmoplastic small round cell tumor (ORDO: Orphanet_83469) |
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| Species of origin |
Homo sapiens (Human)
(NCBI Taxonomy: 9606) |
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| Hierarchy |
Parent: CVCL_9W68 (JN-DSRCT-1) |
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| Sex of cell |
Male |
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| Age at sampling |
7Y |
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| Category |
Cancer cell line |
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| Publications | PubMed=34413129; DOI=10.1158/1535-7163.MCT-21-0089
Gartrell J., Mellado-Largarde M., Clay M.R., Bahrami A., Sahr N.A., Sykes A., Blankenship K., Hoffmann L., Xie J., Cho H.P., Twarog N., Connelly M., Yan K.-K., Yu J.-Y., Porter S.N., Pruett-Miller S.M., Neale G., Tinkle C.L., Federico S.M., Stewart E.A., Shelat A.A.
SLFN11 is widely expressed in pediatric sarcoma and induces variable sensitization to replicative stress caused by DNA-damaging agents.
Mol. Cancer Ther. 20:2151-2165(2021) |
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| Cross-references |
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| Encyclopedic resources |
Wikidata; Q116049602
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| Entry history |
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| Entry creation | 15-Dec-2022 |
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| Last entry update | 29-Jun-2023 |
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| Version number | 3 |
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