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Cellosaurus GM12892 (CVCL_9631)

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Cell line name GM12892
Accession CVCL_9631
Resource Identification Initiative To cite this cell line use: GM12892 (RRID:CVCL_9631)
Comments Part of: CEPH/Utah pedigree cell line collection.
Part of: ENCODE project common cell types; tier 3.
Part of: International Genome Sample Resource (1000 genomes project) cell lines.
Registration: CEPH Families Reference Panel; 146316.
Population: Caucasian; Utah residents with ancestry from Northern and Western Europe.
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: Genomics; DNA methylation analysis.
Omics: Genomics; Whole genome sequencing.
Omics: Proteomics.
Omics: Transcriptomics; Microarray.
Omics: Variations; CNV analysis.
Omics: Variations; SNP array analysis.
Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178.
HLA typing Source: PubMed=27792722
Class I
HLA-AA*02:01,11
HLA-BB*15:01,56
HLA-CC*01,04:01
Class II
HLA-DPDPA1*01:03,02:01:01
DPB1*06:01,14:01
HLA-DQDQA1*01,01
DQB1*05,05
HLA-DRDRB1*01,01
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Female
Age at sampling Age unspecified
Category Transformed cell line
Web pages Info; CEPH; -; https://www.cephb.fr/en/familles_CEPH.php
Info; Complete Genomics; -; https://web.archive.org/web/20220626143727/http://www.completegenomics.com/documents/PublicGenomes.pdf
Info; ENCODE; -; http://genome.ucsc.edu/ENCODE/protocols/cell/human/GM12892_Crawford_protocol.pdf
Publications

PubMed=17122850; DOI=10.1038/nature05329; PMCID=PMC2669898
Richard Redon, Shumpei Ishikawa, Karen R. Fitch, Lars Feuk, George H. Perry, T. Daniel Andrews, Heike Fiegler, Michael H. Shapero, Andrew R. Carson, Wen-Wei Chen, Eun Kyung Cho ...Show all 43 authors... , Stephanie Dallaire, Jennifer L. Freeman, Juan R. Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R. MacDonald, Christian R. Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin John Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Feng-Tang Yang, Jun-Jun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F. Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P. Carter, Hiroyuki Aburatani, Charles Lee, Keith W. Jones, Stephen Wayne Scherer, Matthew Edward Hurles; Show fewer authors
Global variation in copy number in the human genome.
Nature 444:444-454(2006)

PubMed=19043577; DOI=10.1371/journal.pgen.1000287; PMCID=PMC2583954
Edwin Choy, Roman Yelensky, Sasha Bonakdar, Robert M. Plenge, Richa Saxena, Philip Lawrence De Jager, Stanley Y. Shaw, Cara Susan Wolfish, Jacqueline M. Slavik, Chris Cotsapas, Manuel A. Rivas ...Show all 17 authors... , Emmanouil Theophilos Dermitzakis, Ellen Cahir-McFarland, Elliott Dan Kieff, David A. Hafler, Mark Joseph Daly, David Matthew Altshuler; Show fewer authors
Genetic analysis of human traits in vitro: drug response and gene expression in lymphoblastoid cell lines.
PLoS Genet. 4:e1000287.1-e1000287.16(2008)

PubMed=19797678; DOI=10.1101/gr.097600.109; PMCID=PMC2775589
Renuka R. Nayak, Michael Justin Kearns, Richard Saul Spielman, Vivian G. Cheung;
Coexpression network based on natural variation in human gene expression reveals gene interactions and functions.
Genome Res. 19:1953-1962(2009)

PubMed=20398888; DOI=10.1016/j.ajhg.2010.03.017; PMCID=PMC2869002
Beth A. Dombroski, Renuka R. Nayak, Kathryn G. Ewens, Wendy Ankener, Vivian G. Cheung, Richard Saul Spielman;
Gene expression and genetic variation in response to endoplasmic reticulum stress in human cells.
Am. J. Hum. Genet. 86:719-729(2010)

PubMed=20856902; DOI=10.1371/journal.pbio.1000480; PMCID=PMC2939022
Vivian G. Cheung, Renuka R. Nayak, Isabel Xiao-Rong Wang, Susannah Elwyn, Sarah M. Cousins, Michael Morley, Richard Saul Spielman;
Polymorphic cis- and trans-regulation of human gene expression.
PLoS Biol. 8:e1000480.1-e1000480.14(2010)

PubMed=21418647; DOI=10.1186/gb-2011-12-3-r25; PMCID=PMC3129675
Lisanne Morcos, Bing Ge, Vonda Koka, Kevin C.L. Lam, Dmitry K. Pokholok, Kevin L. Gunderson, Alexandre Montpetit, Dominique J. Verlaan, Tomi Pastinen;
Genome-wide assessment of imprinted expression in human cells.
Genome Biol. 12:R25.1-R25.14(2011)

PubMed=23325432; DOI=10.1101/gr.147942.112; PMCID=PMC3589544
Katherine E. Varley, Jason Gertz, Kevin M. Bowling, Stephanie L. Parker, Timothy E. Reddy, Florencia Pauli-Behn, Marie K. Cross, Brian A. Williams, John A. Stamatoyannopoulos, Gregory E. Crawford, Devin Michael Absher ...Show all 13 authors... , Barbara Jane Wold, Richard M. Myers; Show fewer authors
Dynamic DNA methylation across diverse human cell lines and tissues.
Genome Res. 23:555-567(2013)

PubMed=23676674; DOI=10.1038/nature12223; PMCID=PMC3789121
Lin-Feng Wu, Sophie I. Candille, Yoonha Choi, Dan Xie, Li-Hua Jiang, Jennifer Li-Pook-Than, Hua Tang, Michael P. Snyder;
Variation and genetic control of protein abundance in humans.
Nature 499:79-82(2013)

PubMed=26621101; DOI=10.1016/j.jmoldx.2015.08.005; PMCID=PMC4695224
Victoria M. Pratt, Robin E. Everts, Praful Aggarwal, Brittany N. Beyer, Ulrich Broeckel, Ruth Epstein-Baak, Paul Hujsak, Ruth Kornreich, Jun Liao, Rachel Lorier, Stuart A. Scott ...Show all 15 authors... , Ching-Ying Huang Smith, Lorraine H. Toji, Amy Turner, Lisa V. Kalman; Show fewer authors
Characterization of 137 genomic DNA reference materials for 28 pharmacogenetic genes: a GeT-RM collaborative project.
J. Mol. Diagn. 18:109-123(2016)

PubMed=27792722; DOI=10.1371/journal.pcbi.1005151; PMCID=PMC5085092
Alexander T. Dilthey, Pierre-Antoine Gourraud, Alexander J. Mentzer, Nezih Cereb, Zamin Iqbal, Gilean Alistair Tristram McVean;
High-accuracy HLA type inference from whole-genome sequencing data using population reference graphs.
PLoS Comput. Biol. 12:e1005151.1-e1005151.16(2016)

Cross-references
Cell line collections (Providers) Coriell; GM12892
Cell line databases/resources CLO; CLO_0022856
Biological sample resources BioSample; SAMN00801914
ENCODE; ENCBS055ENC
ENCODE; ENCBS255UYZ
ENCODE; ENCBS287ATY
ENCODE; ENCBS564VMX
ENCODE; ENCBS633AAA
ENCODE; ENCBS698HPL
ENCODE; ENCBS726USL
ENCODE; ENCBS781AAA
ENCODE; ENCBS813EMP
ENCODE; ENCBS850AAA
IGSR; NA12892
Encyclopedic resources Wikidata; Q54846193
Experimental variables resources EFO; EFO_0002786
Gene expression databases GEO; GSM112570
GEO; GSM112873
GEO; GSM188849
GEO; GSM291700
GEO; GSM315039
GEO; GSM421105
GEO; GSM486857
GEO; GSM486858
GEO; GSM489282
GEO; GSM489283
GEO; GSM489295
GEO; GSM489296
GEO; GSM649301
GEO; GSM649856
GEO; GSM651140
GEO; GSM651141
GEO; GSM651142
GEO; GSM651143
GEO; GSM651144
GEO; GSM651145
GEO; GSM651146
GEO; GSM651147
GEO; GSM651156
GEO; GSM651157
GEO; GSM651158
GEO; GSM651159
GEO; GSM659990
GEO; GSM660186
GEO; GSM660401
GEO; GSM816657
GEO; GSM905906
GEO; GSM906001
GEO; GSM906096
Entry history
Entry creation06-Jun-2012
Last entry update10-Apr-2025
Version number26