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Cellosaurus GM12892 (CVCL_9631)

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Cell line name GM12892
Accession CVCL_9631
Resource Identification Initiative To cite this cell line use: GM12892 (RRID:CVCL_9631)
Comments Part of: CEPH/Utah pedigree cell line collection.
Part of: ENCODE project common cell types; tier 3.
Part of: International Genome Sample Resource (1000 genomes project) cell lines.
Registration: CEPH Families Reference Panel; 146316.
Population: Caucasian; Utah residents with ancestry from Northern and Western Europe.
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: CNV analysis.
Omics: Deep proteome analysis.
Omics: DNA methylation analysis.
Omics: Genome sequenced.
Omics: SNP array analysis.
Omics: Transcriptome analysis.
Derived from sampling site: Peripheral blood.
HLA typing Source: PubMed=27792722
Class I
HLA-AA*02:01,11
HLA-BB*15:01,56
HLA-CC*01,04:01
Class II
HLA-DPDPA1*01:03,02:01:01
DPB1*06:01,14:01
HLA-DQDQA1*01,01
DQB1*05,05
HLA-DRDRB1*01,01
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Female
Age at sampling Age unspecified
Category Transformed cell line
Web pages http://genome.ucsc.edu/ENCODE/protocols/cell/human/GM12892_Crawford_protocol.pdf
http://www.completegenomics.com/documents/PublicGenomes.pdf
https://www.cephb.fr/en/familles_CEPH.php
Publications

PubMed=17122850; DOI=10.1038/nature05329
Redon R., Ishikawa S., Fitch K.R., Feuk L., Perry G.H., Andrews T.D., Fiegler H., Shapero M.H., Carson A.R., Chen W., Cho E.K., Dallaire S., Freeman J.L., Gonzalez J.R., Gratacos M., Huang J., Kalaitzopoulos D., Komura D., MacDonald J.R., Marshall C.R., Mei R., Montgomery L., Nishimura K., Okamura K., Shen F., Somerville M.J., Tchinda J., Valsesia A., Woodwark C., Yang F., Zhang J., Zerjal T., Zhang J., Armengol L., Conrad D.F., Estivill X., Tyler-Smith C., Carter N.P., Aburatani H., Lee C., Jones K.W., Scherer S.W., Hurles M.E.
Global variation in copy number in the human genome.
Nature 444:444-454(2006)

PubMed=19043577; DOI=10.1371/journal.pgen.1000287
Choy E., Yelensky R., Bonakdar S., Plenge R.M., Saxena R., De Jager P.L., Shaw S.Y., Wolfish C.S., Slavik J.M., Cotsapas C., Rivas M.A., Dermitzakis E.T., Cahir-McFarland E., Kieff E., Hafler D., Daly M.J., Altshuler D.M.
Genetic analysis of human traits in vitro: drug response and gene expression in lymphoblastoid cell lines.
PLoS Genet. 4:E1000287-E1000287(2008)

PubMed=19797678; DOI=10.1101/gr.097600.109
Nayak R.R., Kearns M., Spielman R.S., Cheung V.G.
Coexpression network based on natural variation in human gene expression reveals gene interactions and functions.
Genome Res. 19:1953-1962(2009)

PubMed=20398888; DOI=10.1016/j.ajhg.2010.03.017
Dombroski B.A., Nayak R.R., Ewens K.G., Ankener W., Cheung V.G., Spielman R.S.
Gene expression and genetic variation in response to endoplasmic reticulum stress in human cells.
Am. J. Hum. Genet. 86:719-729(2010)

PubMed=20856902; DOI=10.1371/journal.pbio.1000480
Cheung V.G., Nayak R.R., Wang I.X.-R., Elwyn S., Cousins S.M., Morley M., Spielman R.S.
Polymorphic cis- and trans-regulation of human gene expression.
PLoS Biol. 8:e1000480.1-e1000480.14(2010)

PubMed=21418647; DOI=10.1186/gb-2011-12-3-r25
Morcos L., Ge B., Koka V., Lam K.C., Pokholok D.K., Gunderson K.L., Montpetit A., Verlaan D.J., Pastinen T.
Genome-wide assessment of imprinted expression in human cells.
Genome Biol. 12:R25.1-R25.14(2011)

PubMed=23325432; DOI=10.1101/gr.147942.112
Varley K.E., Gertz J., Bowling K.M., Parker S.L., Reddy T.E., Pauli-Behn F., Cross M.K., Williams B.A., Stamatoyannopoulos J.A., Crawford G.E., Absher D.M., Wold B.J., Myers R.M.
Dynamic DNA methylation across diverse human cell lines and tissues.
Genome Res. 23:555-567(2013)

PubMed=23676674; DOI=10.1038/nature12223
Wu L., Candille S.I., Choi Y., Xie D., Jiang L., Li-Pook-Than J., Tang H., Snyder M.
Variation and genetic control of protein abundance in humans.
Nature 499:79-82(2013)

PubMed=26621101; DOI=10.1016/j.jmoldx.2015.08.005
Pratt V.M., Everts R.E., Aggarwal P., Beyer B.N., Broeckel U., Epstein-Baak R., Hujsak P., Kornreich R., Liao J., Lorier R., Scott S.A., Smith C.-Y.H., Toji L.H., Turner A., Kalman L.V.
Characterization of 137 genomic DNA reference materials for 28 pharmacogenetic genes: a GeT-RM collaborative project.
J. Mol. Diagn. 18:109-123(2016)

PubMed=27792722; DOI=10.1371/journal.pcbi.1005151
Dilthey A.T., Gourraud P.-A., Mentzer A.J., Cereb N., Iqbal Z., McVean G.
High-accuracy HLA type inference from whole-genome sequencing data using population reference graphs.
PLoS Comput. Biol. 12:e1005151.1-e1005151.16(2016)

Cross-references
Cell line collections Coriell; GM12892
Cell line databases/resources CLO; CLO_0022856
Biological sample resources BioSample; SAMN00801914
ENCODE; ENCBS055ENC
ENCODE; ENCBS255UYZ
ENCODE; ENCBS287ATY
ENCODE; ENCBS564VMX
ENCODE; ENCBS633AAA
ENCODE; ENCBS698HPL
ENCODE; ENCBS726USL
ENCODE; ENCBS781AAA
ENCODE; ENCBS813EMP
ENCODE; ENCBS850AAA
IGSR; NA12892
Encyclopedic resources Wikidata; Q54846193
Experimental variables resources EFO; EFO_0002786
Gene expression databases GEO; GSM112570
GEO; GSM112873
GEO; GSM188849
GEO; GSM291700
GEO; GSM315039
GEO; GSM421105
GEO; GSM486857
GEO; GSM486858
GEO; GSM489282
GEO; GSM489283
GEO; GSM489295
GEO; GSM489296
GEO; GSM649301
GEO; GSM649856
GEO; GSM651140
GEO; GSM651141
GEO; GSM651142
GEO; GSM651143
GEO; GSM651144
GEO; GSM651145
GEO; GSM651146
GEO; GSM651147
GEO; GSM651156
GEO; GSM651157
GEO; GSM651158
GEO; GSM651159
GEO; GSM659990
GEO; GSM660186
GEO; GSM660401
GEO; GSM816657
GEO; GSM905906
GEO; GSM906001
GEO; GSM906096
Entry history
Entry creation06-Jun-2012
Last entry update16-Dec-2021
Version number23