Cellosaurus logo
expasy logo

Cellosaurus RKO-E6 (CVCL_3787)

[Text version]
Cell line name RKO-E6
Synonyms RKO E6; RKOE6; RC10-1
Accession CVCL_3787
Resource Identification Initiative To cite this cell line use: RKO-E6 (RRID:CVCL_3787)
Comments Genetic integration: Method=Transfection; Gene=UniProtKB; P03126; Human papillomavirus type 16 protein E6.
Genetic integration: Method=Transfection; Gene=UniProtKB; P00552; Klebsiella pneumoniae transposon Tn5 neo.
Omics: Transcriptomics; RNAseq.
Omics: Variations; SNP array analysis.
Caution: We believe that the clone called RKO-E6 by PubMed=7700629 is the clone RC10-1 originally described by PubMed=8387205 but it is also possible that it is RKO RC10-2 (Cellosaurus=CVCL_E7ET) or RKO RC10-3 (Cellosaurus=CVCL_E7EU) or RKO RC10-4 (Cellosaurus=CVCL_E7EV).
Derived from site: In situ; Colon; UBERON=UBERON_0001155.
Sequence variations
  • Mutation; HGNC; HGNC:173; ACVR2A; Simple; p.Lys437Argfs*5 (c.1310delA); dbSNP=rs764719749; Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; HGNC:1097; BRAF; Simple; p.Val600Glu (c.1799T>A); ClinVar=VCV000013961; Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; HGNC:8975; PIK3CA; Simple; p.His1047Arg (c.3140A>G); ClinVar=VCV000013652; Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; HGNC:11773; TGFBR2; Simple; p.Lys128Serfs*35 (c.383delA); ClinVar=VCV000477546; Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; HGNC:11773; TGFBR2; Simple; p.Leu452Pro (c.1355T>C); ClinVar=VCV000930524; Zygosity=Heterozygous (from parent cell line).
HLA typing Source: PubMed=26589293
Class I
HLA-AA*03:01,03:01
HLA-BB*18:01,37:04
HLA-CC*07:01,07:01
Disease Colon carcinoma (NCIt: C4910)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Hierarchy Parent: CVCL_0504 (RKO)
Sex of cell Sex unspecified
Age at sampling Age unspecified
Category Cancer cell line
STR profile Source(s): ATCC=CRL-2578; PubMed=25877200

Markers:
AmelogeninX
CSF1PO8,11
D3S135816,19
D5S81812,13
D7S8208,10
D8S11799,13,14
D13S3178,12
D16S53913,13.1
D18S5111,13
D21S1128,30
FGA19,22
Penta D10,11
Penta E11,13
TH016,10 (PubMed=25877200)
6.2,10 (ATCC=CRL-2578)
TPOX10,11
vWA16

Run an STR similarity search on this cell line
Publications

PubMed=8387205; DOI=10.1073/pnas.90.9.3988; PMCID=PMC46431
Theodore D. Kessis, Robbert J.C. Slebos, William George Nelson, Michael Barry Kastan, Beverly S. Plunkett, Sung M. Han, Attila T. Lorincz, Lora Hedrick Ellenson, Kathleen R. Cho;
Human papillomavirus 16 E6 expression disrupts the p53-mediated cellular response to DNA damage.
Proc. Natl. Acad. Sci. U.S.A. 90:3988-3992(1993)

PubMed=8202487; DOI=10.1073/pnas.91.12.5320; PMCID=PMC43986
Robbert J.C. Slebos, Mann H. Lee, Beverly S. Plunkett, Theodore D. Kessis, Bart O. Williams, Tyler Jacks, Lora Hedrick Ellenson, Michael Barry Kastan, Kathleen R. Cho;
p53-dependent G1 arrest involves pRB-related proteins and is disrupted by the human papillomavirus 16 E7 oncoprotein.
Proc. Natl. Acad. Sci. U.S.A. 91:5320-5324(1994)

PubMed=7700629
Martin L. Smith, I-Tsuen Chen, Qi-Min Zhan, Patrick M. O'Connor, Albert J. Fornace Jr.;
Involvement of the p53 tumor suppressor in repair of u.v.-type DNA damage.
Oncogene 10:1053-1059(1995)

PubMed=15161374; DOI=10.1667/rr3160
Nicolaas A.P. Franken, Chris van Bree, Jaap Haveman;
Differential response to radiation of TP53-inactivated cells by overexpression of dominant-negative mutant TP53 or HPVE6.
Radiat. Res. 161:504-510(2004)

PubMed=20215515; DOI=10.1158/0008-5472.CAN-09-3458; PMCID=PMC2881662
S. Michael Rothenberg, Gayatry Mohapatra, Miguel N. Rivera, Daniel Winokur, Patricia Greninger, Mai Nitta, Peter M. Sadow, Gaya Sooriyakumar, Brian W. Brannigan, Matthew J. Ulman, Rushika M. Perera ...Show all 22 authors... , Rui Wang, Angela Tam, Xiao-Jun Ma, Mark Erlander, Dennis C. Sgroi, James W. Rocco, Mark W. Lingen, Ezra E.W. Cohen, David Neil Louis, Jeffrey Settleman, Daniel Arie Haber; Show fewer authors
A genome-wide screen for microdeletions reveals disruption of polarity complex genes in diverse human cancers.
Cancer Res. 70:2158-2164(2010)

PubMed=25485619; DOI=10.1038/nbt.3080
Christiaan Klijn, Steffen Durinck, Eric W. Stawiski, Peter M. Haverty, Zhao-Shi Jiang, Han-Bin Liu, Jeremiah Degenhardt, Oleg Mayba, Florian Gnad, Jin-Feng Liu, Gregoire Pau ...Show all 30 authors... , Jens Reeder, Yi Cao, Kiran Mukhyala, Suresh K. Selvaraj, Ma-Mie Yu, Gregory J. Zynda, Matthew J. Brauer, Thomas D. Wu, Robert Clifford Gentleman, Gerard Manning, Robert L. Yauch, Richard Bourgon, David Stokoe, Zora Modrusan, Richard M. Neve, Frederic J. de Sauvage, Jeffrey Settleman, Somasekar Seshagiri, Ze-Min Zhang; Show fewer authors
A comprehensive transcriptional portrait of human cancer cell lines.
Nat. Biotechnol. 33:306-312(2015)

PubMed=25877200; DOI=10.1038/nature14397
Ma-Mie Yu, Suresh K. Selvaraj, May M.Y. Liang-Chu, Sahar Aghajani, Matthew Busse, Jean Yuan, Genee Lee, Franklin V. Peale, Christiaan Klijn, Richard Bourgon, Joshua S. Kaminker, Richard M. Neve;
A resource for cell line authentication, annotation and quality control.
Nature 520:307-311(2015)

PubMed=26589293; DOI=10.1186/s13073-015-0240-5; PMCID=PMC4653878
Jelle Scholtalbers, Sebastian Boegel, Thomas Bukur, Marius Byl, Sebastian Goerges, Patrick Sorn, Martin Loewer, Ugur Sahin, John C. Castle;
TCLP: an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression.
Genome Med. 7:118.1-118.7(2015)

Cross-references
Cell line collections (Providers) ATCC; CRL-2578
CLS; 305135
Cell line databases/resources CLO; CLO_0008827
cancercelllines; CVCL_3787
CCRID; 3101HUMTCHu118
Cell_Model_Passport; SIDM01253
ColonAtlas; RKOE6
IGRhCellID; RKOE6
Anatomy/cell type resources BTO; BTO_0001891
Biological sample resources BioSample; SAMN03471683
BioSample; SAMN03472970
Chemistry resources PharmacoDB; RKOE6_1317_2019
Encyclopedic resources Wikidata; Q54950558
Experimental variables resources EFO; EFO_0002318
Gene expression databases ArrayExpress; E-MTAB-38
ArrayExpress; E-MTAB-2706
Polymorphism and mutation databases Cosmic; 1184102
Cosmic; 1187317
Progenetix; CVCL_3787
Sequence databases EGA; EGAS00001000610
Entry history
Entry creation04-Apr-2012
Last entry update14-Aug-2025
Version number30