• Gene fusion; HGNC; HGNC:622; APPBP2 + HGNC; HGNC:24280; PHF20L1; Name(s)=APPBP2-PHF20L1; Note=In frame (PubMed=23260012).
  
• Gene fusion; HGNC; HGNC:17399; ARHGAP32 + HGNC; HGNC:17312; TIMM23; Name(s)=TIMM23-ARHGAP32; Note=Out of frame (PubMed=23260012).
  
• Gene fusion; HGNC; HGNC:14347; BCAS3 + HGNC; HGNC:3430; ERBB2; Name(s)=ERBB2-BCAS3; Note=Out of frame (PubMed=23260012).
  
• Gene fusion; HGNC; HGNC:14347; BCAS3 + HGNC; HGNC:5120; HOXB9; Name(s)=BCAS3-HOXB9 (PubMed=23260012).
  
• Gene fusion; HGNC; HGNC:2191; COL14A1 + HGNC; HGNC:15605; SKAP1; Name(s)=COL14A1-SKAP1; Note=In frame (PubMed=23260012).
  
• Gene fusion; HGNC; HGNC:25989; CWC25 + HGNC; HGNC:19143; USP32; Name(s)=USP32-CWC25, USP32-CCDC49; Note=Out of frame (PubMed=23260012).
  
• Gene fusion; HGNC; HGNC:2746; DDX5 + HGNC; HGNC:22953; DEPTOR; Name(s)=DDX5-DEPTOR; Note=In frame (PubMed=23260012).
  
• Gene fusion; HGNC; HGNC:3357; ENPP2 + HGNC; HGNC:9069; PLEC; Name(s)=PLEC-ENPP2, PLEC1-ENPP2; Note=In frame (PubMed=23260012).
  
• Gene fusion; HGNC; HGNC:6513; LASP1 + HGNC; HGNC:12340; TRPS1; Name(s)=TRPS1-LASP1; Note=In frame (PubMed=23260012).
  
• Gene fusion; HGNC; HGNC:8001; NRIP1 + HGNC; HGNC:11805; TIAM1; Name(s)=TIAM1-NRIP1; Note=In frame (PubMed=23260012).
  
• Gene fusion; HGNC; HGNC:8153; OPRD1 + HGNC; HGNC:13055; ZMYM4; Name(s)=ZMYM4-OPRD1; Note=Out of frame (PubMed=23260012).
  
• Gene fusion; HGNC; HGNC:12929; PCGF2 + HGNC; HGNC:29259; TAOK1; Name(s)=TAOK1-PCGF2; Note=In frame (PubMed=23260012).
  
• Mutation; HGNC; HGNC:1097; BRAF; Simple; p.Ile326Thr (c.977T>C); ClinVar=VCV000424419; Zygosity=Heterozygous (PubMed=19593635).
  
• Mutation; HGNC; HGNC:1748; CDH1; Simple; p.Glu243Ter (c.727G>T); Zygosity=Homozygous (PubMed=19593635).
  

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PubMed=3335022
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Farahnaz Forozan, Eija H. Mahlamaki, Outi Monni, Yi-Dong Chen, Robin Veldman, Yuan Jiang, Gerald C. Gooden, Stephen P. Ethier, Anne H. Kallioniemi, Olli-Pekka Kallioniemi;
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PubMed=11044355; DOI=10.1054/bjoc.2000.1458; PMCID=PMC2408781
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Molecular cytogenetic analysis of breast cancer cell lines.
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PubMed=11414198; DOI=10.1007/s004320000207
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Comprehensive galectin fingerprinting in a panel of 61 human tumor cell lines by RT-PCR and its implications for diagnostic and therapeutic procedures.
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PubMed=12836015; DOI=10.1007/s00432-003-0445-7
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BRCA1 mutation analysis of 41 human breast cancer cell lines reveals three new deleterious mutants.
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PubMed=16417655; DOI=10.1186/bcr1370; PMCID=PMC1413994
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PubMed=16541312; DOI=10.1007/s10549-006-9186-z
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PubMed=17157791; DOI=10.1016/j.ccr.2006.10.008; PMCID=PMC2730521
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Cancer Cell 10:515-527(2006)

PubMed=19582160; DOI=10.1371/journal.pone.0006146; PMCID=PMC2702084
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Molecular profiling of breast cancer cell lines defines relevant tumor models and provides a resource for cancer gene discovery.
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PubMed=19593635; DOI=10.1007/s10549-009-0460-8
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Distinct gene mutation profiles among luminal-type and basal-type breast cancer cell lines.
Breast Cancer Res. Treat. 121:53-64(2010)

PubMed=20070913; DOI=10.1186/1471-2407-10-15; PMCID=PMC2836299
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Breast cancer cell lines carry cell line-specific genomic alterations that are distinct from aberrations in breast cancer tissues: comparison of the CGH profiles between cancer cell lines and primary cancer tissues.
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PubMed=20164919; DOI=10.1038/nature08768; PMCID=PMC3145113
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PubMed=22460905; DOI=10.1038/nature11003; PMCID=PMC3320027
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The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.
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PubMed=23151021; DOI=10.1186/1471-2164-13-619; PMCID=PMC3546428
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PubMed=23260012; DOI=10.1186/1471-2164-13-719; PMCID=PMC3548764
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Structural analysis of the genome of breast cancer cell line ZR-75-30 identifies twelve expressed fusion genes.
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PubMed=23601657; DOI=10.1186/bcr3415; PMCID=PMC3672661
Muhammad Riaz, Marijn T.M. van Jaarsveld, Antoinette Hollestelle, Wendy J.C. Prager-van der Smissen, Anouk A.J. Heine, Antonius W.M. Boersma, Jing-Jing Liu, Jean C.A. Helmijr, Bahar Ozturk, Marcel Smid, Erik A.C. Wiemer ...Show all 13 authors... , John A. Foekens, John W.M. Martens; Show fewer authors
miRNA expression profiling of 51 human breast cancer cell lines reveals subtype and driver mutation-specific miRNAs.
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PubMed=24009699; DOI=10.1371/journal.pone.0072704; PMCID=PMC3751845
Xia Liu, Huan Nie, Yu-Bao Zhang, Yuan-Fei Yao, Alaiyi Maitikabili, You-Peng Qu, Shu-Liang Shi, Cui-Ying Chen, Yu Li;
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PubMed=24094812; DOI=10.1016/j.ccr.2013.08.020; PMCID=PMC3931310
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Glutamine sensitivity analysis identifies the xCT antiporter as a common triple-negative breast tumor therapeutic target.
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PubMed=24176112; DOI=10.1186/gb-2013-14-10-r110; PMCID=PMC3937590
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A catalog of HLA type, HLA expression, and neo-epitope candidates in human cancer cell lines.
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PubMed=25984343; DOI=10.1038/sdata.2014.35; PMCID=PMC4432652
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PubMed=25485619; DOI=10.1038/nbt.3080
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PubMed=25877200; DOI=10.1038/nature14397
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A resource for cell line authentication, annotation and quality control.
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PubMed=26589293; DOI=10.1186/s13073-015-0240-5; PMCID=PMC4653878
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TCLP: an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression.
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PubMed=27397505; DOI=10.1016/j.cell.2016.06.017; PMCID=PMC4967469
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PubMed=28196595; DOI=10.1016/j.ccell.2017.01.005; PMCID=PMC5501076
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Characterization of human cancer cell lines by reverse-phase protein arrays.
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PubMed=30894373; DOI=10.1158/0008-5472.CAN-18-2747; PMCID=PMC6445675
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PubMed=31068700; DOI=10.1038/s41586-019-1186-3; PMCID=PMC6697103
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Next-generation characterization of the Cancer Cell Line Encyclopedia.
Nature 569:503-508(2019)

PubMed=31395879; DOI=10.1038/s41467-019-11415-2; PMCID=PMC6687785
Katharine Yu, Bin Chen, Dvir Aran, Joe Charalel, Christina Yau, Douglas M. Wolf, Laura J. van 't Veer, Atul Janardhan Butte, Ted Goldstein, Marina Sirota;
Comprehensive transcriptomic analysis of cell lines as models of primary tumors across 22 tumor types.
Nat. Commun. 10:3574.1-3574.11(2019)

PubMed=35839778; DOI=10.1016/j.ccell.2022.06.010; PMCID=PMC9387775
Emanuel Goncalves, Rebecca C. Poulos, Zhao-Xiang Cai, Syd Barthorpe, Srikanth S. Manda, Natasha Lucas, Alexandra Beck, Daniel Bucio-Noble, Michael Dausmann, Caitlin Hall, Michael Hecker ...Show all 32 authors... , Jennifer Koh, Howard Lightfoot, Sadia Mahboob, Iman Mali, James Morris, Laura Richardson, Akila J. Seneviratne, Rebecca Shepherd, Erin Sykes, Frances Thomas, Sara Valentini, Steven G. Williams, Yang-Xiu Wu, Dylan Xavier, Karen L. MacKenzie, Peter G. Hains, Brett Tully, Phillip James Robinson, Qing Zhong, Mathew J. Garnett, Roger Robert Reddel; Show fewer authors
Pan-cancer proteomic map of 949 human cell lines.
Cancer Cell 40:835-849.e8(2022)