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Cellosaurus Ca Ski (CVCL_1100)

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Cell line name Ca Ski
Synonyms Ca-Ski; CaSki; Caski; CASKI
Accession CVCL_1100
Resource Identification Initiative To cite this cell line use: Ca Ski (RRID:CVCL_1100)
Comments Group: Space-flown cell line (cellonaut).
Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE).
Part of: COSMIC cell lines project.
Part of: Naval Biosciences Laboratory (NBL) collection (transferred to ATCC in 1982).
Population: Caucasian.
Virology: Contains from 100 to 800 copies of the HPV16 genome; some complete and others truncated.
Doubling time: 3.2 days (PubMed=29156801).
Microsatellite instability: Stable (MSS) (Sanger).
Transformant: NCBI_TaxID; 333760; Human papillomavirus type 16 (HPV16).
Omics: Genomics; DNA methylation analysis.
Omics: Genomics; Whole exome sequencing.
Omics: Phenotyping; Drug screening.
Omics: Proteomics; Expression; Reverse-phase protein array.
Omics: Proteomics; Quantitative.
Omics: Transcriptomics; Microarray.
Omics: Transcriptomics; RNAseq.
Omics: Variations; CNV analysis.
Omics: Variations; SNP array analysis.
Derived from site: Metastatic; Small intestine; UBERON=UBERON_0002108.
Sequence variations
  • Mutation; HGNC; HGNC:7133; KMT2D; Simple; p.Gln4079Ter (c.12235C>T); Zygosity=Heterozygous (Cosmic-CLP=906824; DepMap=ACH-001336).
  • Mutation; HGNC; HGNC:8975; PIK3CA; Simple; p.Glu545Lys (c.1633G>A); ClinVar=VCV000013655; Zygosity=Heterozygous (Cosmic-CLP=906824; DepMap=ACH-001336).
  • Mutation; HGNC; HGNC:11998; TP53; None_reported; -; Zygosity=- (PubMed=9887230).
HLA typing Source: PubMed=26589293
Class I
HLA-AA*02:01,03:01
HLA-BB*07:02,37:01
HLA-CC*07:02,07:02
Genome ancestry Source: PubMed=30894373

Origin% genome
African1.02
Native American0
East Asian, North1.86
East Asian, South0
South Asian0
European, North68.36
European, South28.76
Disease Human papillomavirus-related cervical squamous cell carcinoma (NCIt: C27676)
Squamous cell carcinoma of the cervix uteri (ORDO: Orphanet_213767)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Female
Age at sampling 40Y
Category Cancer cell line
STR profile Source(s): AddexBio=C0008004/375; ATCC=CRL-1550; CCRID; CLS=300145; Cosmic-CLP=906824; DepMap=ACH-001336; ECACC=87020501; JCRB=IFO50007; KCLB=21550; PubMed=25877200; PubMed=29156801; RCB=RCB1947; TKG=TKG 0366

Markers:
AmelogeninX
CSF1PO10
D2S133821
D3S135815
D5S81813
D7S8208,11
D8S117915
D13S3178,12
D16S53911,12
D18S5117
D19S43315,16
D21S1130
FGA21
Penta D10
Penta E5
TH017
TPOX8
vWA17

Run an STR similarity search on this cell line
Web pages Info; Thermo Fisher; -; https://www.thermofisher.com/ch/en/home/technical-resources/cell-lines/c/cell-lines-detail-21.html
Publications

PubMed=867042; DOI=10.1126/science.867042
Roland Anthony Pattillo, Robert O. Hussa, Michael T. Story, Anna C.F. Ruckert, M. Refaat Shalaby, Richard F. Mattingly;
Tumor antigen and human chorionic gonadotropin in CaSki cells: a new epidermoid cervical cancer cell line.
Science 196:1456-1458(1977)

PubMed=2990217; PMCID=PMC1888002
Carole Yee, Indira Krishnan-Hewlett, Carl C. Baker, Richard Schlegel, Peter Maxwell Howley;
Presence and expression of human papillomavirus sequences in human cervical carcinoma cell lines.
Am. J. Pathol. 119:361-366(1985)

PubMed=3029430; DOI=10.1128/JVI.61.4.962-971.1987; PMCID=PMC254051
Carl C. Baker, William C. Phelps, Valerie Lindgren, Michael J. Braun, Matthew A. Gonda, Peter Maxwell Howley;
Structural and transcriptional analysis of human papillomavirus type 16 sequences in cervical carcinoma cell lines.
J. Virol. 61:962-971(1987)

PubMed=3371749; DOI=10.1016/0090-8258(88)90029-7
Seija E. Grenman, Amnon Shapira, Thomas E. Carey;
In vitro response of cervical cancer cell lines CaSki, HeLa, and ME-180 to the antiestrogen tamoxifen.
Gynecol. Oncol. 30:228-238(1988)

PubMed=7751322; DOI=10.1007/BF01366967
Virpi Rantanen, Seija E. Grenman, Jarmo Kulmala, Reidar Grenman;
The intrinsic radiosensitivity and sublethal damage repair capacity of five cervical carcinoma cell lines tested with the 96-well-plate assay.
J. Cancer Res. Clin. Oncol. 121:230-234(1995)

CLPUB00481
Haruhiko Kuno, Touho Yoshida;
Detection of human papillomavirus types 16, 18, and 33 in cell lines derived from human genital organs by polymerase chain reaction.
Res. Commun. Inst. Ferment. 18:6-12(1997)

PubMed=9887230; DOI=10.1006/gyno.1998.5194
Virpi Rantanen, Seija E. Grenman, Kaisa Kurvinen, Sakari H. Hietanen, Misa Raitanen, Stina M. Syrjanen;
p53 mutations and presence of HPV DNA do not correlate with radiosensitivity of gynecological cancer cell lines.
Gynecol. Oncol. 71:352-358(1998)

PubMed=10423141; DOI=10.1099/0022-1317-80-7-1725
John D. Meissner;
Nucleotide sequences and further characterization of human papillomavirus DNA present in the CaSki, SiHa and HeLa cervical carcinoma cell lines.
J. Gen. Virol. 80:1725-1733(1999)

PubMed=15531914; DOI=10.1038/sj.onc.1208235
Stefan E. Baldus, Elisabeth Schwarz, Claudia Lohrey, Marc Zapatka, Stephanie Landsberg, Stephan A. Hahn, Dietmar Schmidt, Hans-Peter Dienes, Wolff Helmut Schmiegel, Irmgard Schwarte-Waldhoff;
Smad4 deficiency in cervical carcinoma cells.
Oncogene 24:810-819(2005)

PubMed=17311676; DOI=10.1186/1471-2164-8-53; PMCID=PMC1805756
Judith N. Kloth, Jan Oosting, Tom van Wezel, Karoly Szuhai, Jeroen Knijnenburg, Arko Gorter, Gemma G. Kenter, Gert Jan Fleuren, Ekaterina S. Jordanova;
Combined array-comparative genomic hybridization and single-nucleotide polymorphism-loss of heterozygosity analysis reveals complex genetic alterations in cervical cancer.
BMC Genomics 8:53.1-53.13(2007)

PubMed=17611311
Cheng Yang, Guan-Cheng Li, Yue-Hui Li, Jin-Yue Hu, Yan Xiao, Zhi-Jie Zhang;
Biological properties of Caski cell lines induced by exposing to the space environment.
Zhong Nan Da Xue Xue Bao Yi Xue Ban 32:380-386(2007)

PubMed=20164919; DOI=10.1038/nature08768; PMCID=PMC3145113
Graham Robert Bignell, Christopher D. Greenman, Helen R. Davies, Adam P. Butler, Sarah Edkins, Jenny M. Andrews, Gemma Buck, Lina Chen, David Beare, Calli Latimer, Sara Widaa, Jonathan Hinton, Ciara Fahey ...Show all 22 authors... , Bei-Yuan Fu, Sajani Swamy, Gillian L. Dalgliesh, Bin Tean Teh, Panos Deloukas, Feng-Tang Yang, Peter J. Campbell, P. Andrew Futreal, Michael Rudolf Stratton; Show fewer authors
Signatures of mutation and selection in the cancer genome.
Nature 463:893-898(2010)

PubMed=20215515; DOI=10.1158/0008-5472.CAN-09-3458; PMCID=PMC2881662
S. Michael Rothenberg, Gayatry Mohapatra, Miguel N. Rivera, Daniel Winokur, Patricia Greninger, Mai Nitta, Peter M. Sadow, Gaya Sooriyakumar, Brian W. Brannigan, Matthew J. Ulman, Rushika M. Perera, Rui Wang, Angela Tam ...Show all 22 authors... , Xiao-Jun Ma, Mark Erlander, Dennis C. Sgroi, James W. Rocco, Mark W. Lingen, Ezra E.W. Cohen, David Neil Louis, Jeffrey Settleman, Daniel Arie Haber; Show fewer authors
A genome-wide screen for microdeletions reveals disruption of polarity complex genes in diverse human cancers.
Cancer Res. 70:2158-2164(2010)

PubMed=21439369; DOI=10.1016/j.mcp.2011.03.003
Markus Schmitt, Michael Pawlita;
The HPV transcriptome in HPV16 positive cell lines.
Mol. Cell. Probes 25:108-113(2011)

PubMed=22412903; DOI=10.1371/journal.pone.0032667; PMCID=PMC3296745
Oscar Vazquez-Mena, Ingrid Medina-Martinez, Eligia Juarez-Torres, Valeria Barron, Ana Espinosa, Nicolas Villegas-Sepulveda, Laura Gomez-Laguna, Karem Nieto-Martinez, Lorena Orozco, Edgar Roman-Bassaure, Sergio Munoz Cortez, Manuel Borges Ibanez, Carlos Alberto Venegas-Vega ...Show all 17 authors... , Mariano Guardado-Estrada, Angelica Rangel-Lopez, Susana Kofman, Jaime Berumen; Show fewer authors
Amplified genes may be overexpressed, unchanged, or downregulated in cervical cancer cell lines.
PLoS ONE 7:e32667.1-e32667.17(2012)

PubMed=24134916; DOI=10.1186/1755-8166-6-44; PMCID=PMC3879223
Amanda McCormack, Jiang-Lan Fan, Max Duesberg, Mathew Bloomfield, Christian Fiala, Peter Heinz Duesberg;
Individual karyotypes at the origins of cervical carcinomas.
Mol. Cytogenet. 6:44.1-44.23(2013)

PubMed=24201445; DOI=10.1101/gr.164806.113; PMCID=PMC3912410
Keiko Akagi, Jing-Feng Li, Tatevik R. Broutian, Hesed Maria Padilla-Nash, Wei-Hong Xiao, Bo Jiang, James W. Rocco, Theodoros Null Teknos, Bhavna Kumar, Danny Wangsa, Dan He, Thomas Ried, David E. Symer ...Show all 14 authors... , Maura Lianne Gillison; Show fewer authors
Genome-wide analysis of HPV integration in human cancers reveals recurrent, focal genomic instability.
Genome Res. 24:185-199(2014)

PubMed=25485619; DOI=10.1038/nbt.3080
Christiaan Klijn, Steffen Durinck, Eric W. Stawiski, Peter M. Haverty, Zhao-Shi Jiang, Han-Bin Liu, Jeremiah Degenhardt, Oleg Mayba, Florian Gnad, Jin-Feng Liu, Gregoire Pau, Jens Reeder, Yi Cao ...Show all 30 authors... , Kiran Mukhyala, Suresh K. Selvaraj, Ma-Mie Yu, Gregory J. Zynda, Matthew J. Brauer, Thomas D. Wu, Robert Clifford Gentleman, Gerard Manning, Robert L. Yauch, Richard Bourgon, David Stokoe, Zora Modrusan, Richard M. Neve, Frederic J. de Sauvage, Jeffrey Settleman, Somasekar Seshagiri, Ze-Min Zhang; Show fewer authors
A comprehensive transcriptional portrait of human cancer cell lines.
Nat. Biotechnol. 33:306-312(2015)

PubMed=25877200; DOI=10.1038/nature14397
Ma-Mie Yu, Suresh K. Selvaraj, May M.Y. Liang-Chu, Sahar Aghajani, Matthew Busse, Jean Yuan, Genee Lee, Franklin V. Peale, Christiaan Klijn, Richard Bourgon, Joshua S. Kaminker, Richard M. Neve;
A resource for cell line authentication, annotation and quality control.
Nature 520:307-311(2015)

PubMed=26589293; DOI=10.1186/s13073-015-0240-5; PMCID=PMC4653878
Jelle Scholtalbers, Sebastian Boegel, Thomas Bukur, Marius Byl, Sebastian Goerges, Patrick Sorn, Martin Loewer, Ugur Sahin, John C. Castle;
TCLP: an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression.
Genome Med. 7:118.1-118.7(2015)

PubMed=27397505; DOI=10.1016/j.cell.2016.06.017; PMCID=PMC4967469
Francesco Iorio, Theo A. Knijnenburg, Daniel J. Vis, Graham Robert Bignell, Michael Patrick Menden, Michael Schubert, Nanne Aben, Emanuel Goncalves, Syd Barthorpe, Howard Lightfoot, Thomas Cokelaer, Patricia Greninger, Ewald van Dyk ...Show all 39 authors... , Han Chang, Heshani de Silva, Holger Heyn, Xian-Ming Deng, Regina K. Egan, Qing-Song Liu, Tatiana Mironenko, Xeni Mitropoulos, Laura Richardson, Jin-Hua Wang, Ting-Hu Zhang, Sebastian Moran, Sergi Sayols, Maryam Soleimani, David Tamborero, Nuria Lopez-Bigas, Petra Ross-Macdonald, Manel Esteller, Nathanael S. Gray, Daniel Arie Haber, Michael Rudolf Stratton, Cyril Henri Benes, Lodewyk F.A. Wessels, Julio Saez-Rodriguez, Ultan McDermott, Mathew J. Garnett; Show fewer authors
A landscape of pharmacogenomic interactions in cancer.
Cell 166:740-754(2016)

PubMed=29156801; DOI=10.18632/oncotarget.21174; PMCID=PMC5689691
Nene N. Kalu, Tuhina Mazumdar, Shao-Hua Peng, Li Shen, Vaishnav Sambandam, Xia-Yu Rao, Yuan-Xin Xi, Le-Rong Li, Yuan Qi, Frederico O. Gleber-Netto, Ameeta Patel, Jing Wang, Mitchell J. Frederick ...Show all 16 authors... , Jeffrey N. Myers, Curtis R. Pickering, Faye M. Johnson; Show fewer authors
Genomic characterization of human papillomavirus-positive and -negative human squamous cell cancer cell lines.
Oncotarget 8:86369-86383(2017)

PubMed=30894373; DOI=10.1158/0008-5472.CAN-18-2747; PMCID=PMC6445675
Julie Dutil, Zhi-Hua Chen, Alvaro N.A. Monteiro, Jamie K. Teer, Steven A. Eschrich;
An interactive resource to probe genetic diversity and estimated ancestry in cancer cell lines.
Cancer Res. 79:1263-1273(2019)

PubMed=35839778; DOI=10.1016/j.ccell.2022.06.010; PMCID=PMC9387775
Emanuel Goncalves, Rebecca C. Poulos, Zhao-Xiang Cai, Syd Barthorpe, Srikanth S. Manda, Natasha Lucas, Alexandra Beck, Daniel Bucio-Noble, Michael Dausmann, Caitlin Hall, Michael Hecker, Jennifer Koh, Howard Lightfoot ...Show all 32 authors... , Sadia Mahboob, Iman Mali, James Morris, Laura Richardson, Akila J. Seneviratne, Rebecca Shepherd, Erin Sykes, Frances Thomas, Sara Valentini, Steven G. Williams, Yang-Xiu Wu, Dylan Xavier, Karen L. MacKenzie, Peter G. Hains, Brett Tully, Phillip James Robinson, Qing Zhong, Mathew J. Garnett, Roger Robert Reddel; Show fewer authors
Pan-cancer proteomic map of 949 human cell lines.
Cancer Cell 40:835-849.e8(2022)

Cross-references
Cell line collections (Providers) AddexBio; C0008004/375
ATCC; CRL-1550
ATCC; CRL-7915 - Discontinued
ATCC; CRM-CRL-1550
BCRC; 60251
CCTCC; GDC0111
CLS; 300145
ECACC; 87020501
IBRC; C10345
ICLC; HTL98018
IZSLER; BS TCL 201
JCRB; IFO50007
KCB; KCB 2013034YJ
KCLB; 21550
RCB; RCB1947
TKG; TKG 0366
Cell line databases/resources CLO; CLO_0002165
CLO; CLO_0002201
CLO; CLO_0050930
CLDB; cl603
CLDB; cl604
CLDB; cl605
CLDB; cl4940
cancercelllines; CVCL_1100
CCRID; 1101HUM-PUMC000101
CCRID; 1102HUM-NIFDC00093
CCRID; 3101HUMTCHu137
CCRID; 4201HUM-CCTCC00111
Cell_Model_Passport; SIDM00923
Cosmic-CLP; 906824
DepMap; ACH-001336
IGRhCellID; CaSki%20GEO
LINCS_HMS; 50006
LINCS_LDP; LCL-1541
Lonza; 1669
Anatomy/cell type resources BTO; BTO_0003109
Biological sample resources BioSample; SAMN01821540
BioSample; SAMN01821672
BioSample; SAMN01821725
BioSample; SAMN03473214
Chemistry resources ChEMBL-Cells; CHEMBL3308097
ChEMBL-Targets; CHEMBL1075403
GDSC; 906824
PharmacoDB; CaSki_158_2019
PubChem_Cell_line; CVCL_1100
Encyclopedic resources Wikidata; Q54808287
Experimental variables resources EFO; EFO_0006549
Gene expression databases ArrayExpress; E-MTAB-783
ArrayExpress; E-MTAB-2706
ArrayExpress; E-MTAB-3610
FANTOM5_SSTAR; 10431-106D8
GEO; GSM29720
GEO; GSM113861
GEO; GSM226732
GEO; GSM226867
GEO; GSM253297
GEO; GSM675733
GEO; GSM685445
GEO; GSM722572
GEO; GSM722573
GEO; GSM723053
GEO; GSM723054
GEO; GSM827309
GEO; GSM1669667
Polymorphism and mutation databases Cosmic; 687507
Cosmic; 760221
Cosmic; 809232
Cosmic; 846182
Cosmic; 877469
Cosmic; 906824
Cosmic; 925357
Cosmic; 928904
Cosmic; 1019307
Cosmic; 1131519
Cosmic; 1193033
Cosmic; 1201775
Cosmic; 1324211
Cosmic; 1995364
Cosmic; 2060797
Cosmic; 2301538
Cosmic; 2646655
Cosmic; 2660195
Cosmic; 2668297
Cosmic; 2791017
Cosmic; 2816212
IARC_TP53; 21261
Progenetix; CVCL_1100
Proteomic databases PRIDE; PXD030304
Sequence databases EGA; EGAS00001000610
EGA; EGAS00001000978
Entry history
Entry creation04-Apr-2012
Last entry update10-Apr-2025
Version number44