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Cellosaurus (CVCL_ZK75)

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Comments Microsatellite instability: Stable (MSS) (Sanger).
Omics: Genomics; DNA methylation analysis.
Omics: Genomics; Whole exome sequencing.
Omics: Genomics; Whole genome sequencing; Low read coverage.
Omics: Phenotyping; CRISPR screening.
Omics: Phenotyping; Drug screening.
Omics: Proteomics; Expression; Reverse-phase protein array.
Omics: Proteomics; Quantitative.
Omics: Transcriptomics; Microarray.
Omics: Transcriptomics; RNAseq.
Omics: Variations; SNP array analysis.
Derived from site: In situ; Pharynx, hypopharynx; UBERON=UBERON_0001051.
Cell type: Epithelial cell; CL=CL_0000066.
Sequence variations
  • Mutation; HGNC; HGNC:1787; CDKN2A; Simple; c.151-1G>T; ClinVar=VCV000422058; Zygosity=Homozygous; Note=Splice acceptor mutation (ATCC=HTB-43; Cosmic-CLP=906863; DepMap=ACH-000846).
  • Mutation; HGNC; HGNC:3595; FAT1; Simple; p.Lys3277Asnfs*4 (c.9828delG) (p.Gly3276fs); Zygosity=Heterozygous (Cosmic-CLP=906863; DepMap=ACH-000846).
  • Mutation; HGNC; HGNC:11998; TP53; Simple; c.376-1G>A (p.Tyr126_Lys132del, c.376_396del21); ClinVar=VCV000481003; Zygosity=Heterozygous; Note=Splice acceptor mutation (PubMed=1394225; PubMed=11799138; PubMed=23613873; ATCC=HTB-43; Cosmic-CLP=906863; DepMap=ACH-000846).
  • Mutation; HGNC; HGNC:11998; TP53; Simple; p.Arg248Leu (c.743G>T); ClinVar=VCV000230253; Zygosity=Heterozygous (PubMed=1394225; PubMed=11799138; PubMed=23613873; ATCC=HTB-43; Cosmic-CLP=906863; DepMap=ACH-000846).
HLA typing Source: PubMed=26589293
Class I
HLA-AA*01:01,01:01
HLA-BB*15:17,37:04
HLA-CC*07:01,07:01
Genome ancestry Source: PubMed=30894373

Origin% genome
African2.06
Native American0
East Asian, North11.01
East Asian, South0
South Asian79.51
European, North0
European, South7.42
Disease Hypopharyngeal squamous cell carcinoma (NCIt: C4043)
Squamous cell carcinoma of the hypopharynx (ORDO: Orphanet_494547)
Species of origin Cricetulus griseus (Chinese hamster) (Cricetulus barabensis griseus) (NCBI Taxonomy: 9606)
Sex of cell Male
Age at sampling 56Y
Category Cancer cell line
STR profile Source(s): ATCC=HTB-43; Cosmic-CLP=906863; DSMZ=ACC-784; KCLB=30043; PubMed=21868764; PubMed=25877200; PubMed=33802339; PubMed=36912284; Technion Genomics Center

Markers:
AmelogeninX (KCLB=30043)
Not_detected (ATCC=HTB-43; Cosmic-CLP=906863; DSMZ=ACC-784; PubMed=21868764; PubMed=25877200; PubMed=33802339; PubMed=36912284; Technion Genomics Center)
CSF1PO12
D10S124815,17
D12S39117,21
D13S3178,9 (ATCC=HTB-43; PubMed=21868764; PubMed=25877200; PubMed=33802339; PubMed=36912284; Technion Genomics Center)
9 (DSMZ=ACC-784)
D16S53911 (ATCC=HTB-43; Cosmic-CLP=906863; PubMed=21868764; PubMed=25877200; PubMed=33802339; PubMed=36912284; Technion Genomics Center)
11,12 (DSMZ=ACC-784)
D18S5116
D19S43314,16
D1S165616,16.3
D21S1131 (DSMZ=ACC-784)
31.2 (ATCC=HTB-43; PubMed=25877200; PubMed=33802339; Technion Genomics Center)
D22S104511
D2S133819
D2S44111
D3S135817,18
D5S81812
D7S82011,12
D8S117913
FGA25
Penta D11
Penta E17,19
TH018
TPOX11
vWA15,17 (ATCC=HTB-43; Cosmic-CLP=906863; KCLB=30043; PubMed=21868764; PubMed=25877200; PubMed=36912284; Technion Genomics Center)
15,17,18 (DSMZ=ACC-784; PubMed=33802339)

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Entry history
Entry creation04-Apr-2012
Last entry update25-Jun-2026
Version number50