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Cellosaurus HCC1263 (CVCL_V686)

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Cell line name HCC1263
Synonyms Hamon Cancer Center 1263
Accession CVCL_V686
Resource Identification Initiative To cite this cell line use: HCC1263 (RRID:CVCL_V686)
Comments Population: African American.
Omics: Transcriptomics; RNAseq.
Omics: Variations; SNP array analysis.
Miscellaneous: Direct author submission of STR profile from Girard, Luc & Gazdar, Adi F.
HLA typing Source: PubMed=26589293
Class I
HLA-AA*01:01,23:01
HLA-BB*07:02,50:01
HLA-CC*06:02,07:02
Class II
HLA-DQDQB1*06:02,06:02
HLA-DRDRB1*04:03,13:01
Disease Colorectal adenocarcinoma (NCIt: C5105)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Female
Age at sampling 20Y
Category Cancer cell line
STR profile Source(s): Direct_author_submission; PubMed=25877200

Markers:
AmelogeninX
CSF1PO10
D3S135816,17
D5S81813
D7S82010
D8S117915
D13S31712
D16S5399,11
D18S5120
D21S1127,32.2
FGA22
Penta D3.2,8
Penta E17
TH016,8
TPOX6
vWA13,15

Run an STR similarity search on this cell line
Web pages Provider; UT Southwestern; -; https://www.utsouthwestern.edu/edumedia/edufiles/about_us/admin_offices/technology_development/available_technologies/cell-lines.pdf
Publications

PubMed=25485619; DOI=10.1038/nbt.3080
Christiaan Klijn, Steffen Durinck, Eric W. Stawiski, Peter M. Haverty, Zhao-Shi Jiang, Han-Bin Liu, Jeremiah Degenhardt, Oleg Mayba, Florian Gnad, Jin-Feng Liu, Gregoire Pau ...Show all 30 authors... , Jens Reeder, Yi Cao, Kiran Mukhyala, Suresh K. Selvaraj, Ma-Mie Yu, Gregory J. Zynda, Matthew J. Brauer, Thomas D. Wu, Robert Clifford Gentleman, Gerard Manning, Robert L. Yauch, Richard Bourgon, David Stokoe, Zora Modrusan, Richard M. Neve, Frederic J. de Sauvage, Jeffrey Settleman, Somasekar Seshagiri, Ze-Min Zhang; Show fewer authors
A comprehensive transcriptional portrait of human cancer cell lines.
Nat. Biotechnol. 33:306-312(2015)

PubMed=25877200; DOI=10.1038/nature14397
Ma-Mie Yu, Suresh K. Selvaraj, May M.Y. Liang-Chu, Sahar Aghajani, Matthew Busse, Jean Yuan, Genee Lee, Franklin V. Peale, Christiaan Klijn, Richard Bourgon, Joshua S. Kaminker, Richard M. Neve;
A resource for cell line authentication, annotation and quality control.
Nature 520:307-311(2015)

PubMed=26589293; DOI=10.1186/s13073-015-0240-5; PMCID=PMC4653878
Jelle Scholtalbers, Sebastian Boegel, Thomas Bukur, Marius Byl, Sebastian Goerges, Patrick Sorn, Martin Loewer, Ugur Sahin, John C. Castle;
TCLP: an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression.
Genome Med. 7:118.1-118.7(2015)

Cross-references
Cell line databases/resources ColonAtlas; HCC1263
Biological sample resources BioSample; SAMN03473031
Chemistry resources PharmacoDB; HCC1263_471_2019
Encyclopedic resources Wikidata; Q54881549
Experimental variables resources EFO; EFO_0006424
Gene expression databases ArrayExpress; E-MTAB-2706
Sequence databases EGA; EGAS00001000610
Entry history
Entry creation16-Apr-2014
Last entry update14-Aug-2025
Version number17