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Cellosaurus HCC1493 (CVCL_V592)

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Cell line name HCC1493
Synonyms Hamon Cancer Center 1493
Accession CVCL_V592
Resource Identification Initiative To cite this cell line use: HCC1493 (RRID:CVCL_V592)
Comments Omics: Genomics; Whole exome sequencing.
Omics: Transcriptomics; RNAseq.
Omics: Variations; SNP array analysis.
Miscellaneous: Direct author submission of STR profile from Girard, Luc & Gazdar, Adi F.
Sequence variations
HLA typing Source: PubMed=26589293
Class I
HLA-AA*26:01,69:01
HLA-BB*13:02,55:01
HLA-CC*01:02,06:02
Class II
HLA-DQDQA1*05:02,05:02
DQB1*03:01,03:01
HLA-DRDRB1*11:01,11:01
Disease Breast adenocarcinoma (NCIt: C5214)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Female
Age at sampling 43Y
Category Cancer cell line
STR profile Source(s): Direct_author_submission; PubMed=25877200

Markers:
AmelogeninX
CSF1PO12,13
D1S165612,17.3
D2S44111,14
D2S133819,22
D3S135815,17
D5S81811
D7S8208,11
D8S11798,14
D10S124813,14
D12S39115,19
D13S31711,12
D16S5398,9
D18S5111,17
D19S43313,14
D21S1130
D22S104511,15
FGA21,23
Penta D13
Penta E11,23
TH016,8
TPOX8,11
vWA17

Run an STR similarity search on this cell line
Web pages Provider; UT Southwestern; -; https://www.utsouthwestern.edu/edumedia/edufiles/about_us/admin_offices/technology_development/available_technologies/cell-lines.pdf
Publications

PubMed=25485619; DOI=10.1038/nbt.3080
Christiaan Klijn, Steffen Durinck, Eric W. Stawiski, Peter M. Haverty, Zhao-Shi Jiang, Han-Bin Liu, Jeremiah Degenhardt, Oleg Mayba, Florian Gnad, Jin-Feng Liu, Gregoire Pau ...Show all 30 authors... , Jens Reeder, Yi Cao, Kiran Mukhyala, Suresh K. Selvaraj, Ma-Mie Yu, Gregory J. Zynda, Matthew J. Brauer, Thomas D. Wu, Robert Clifford Gentleman, Gerard Manning, Robert L. Yauch, Richard Bourgon, David Stokoe, Zora Modrusan, Richard M. Neve, Frederic J. de Sauvage, Jeffrey Settleman, Somasekar Seshagiri, Ze-Min Zhang; Show fewer authors
A comprehensive transcriptional portrait of human cancer cell lines.
Nat. Biotechnol. 33:306-312(2015)

PubMed=25877200; DOI=10.1038/nature14397
Ma-Mie Yu, Suresh K. Selvaraj, May M.Y. Liang-Chu, Sahar Aghajani, Matthew Busse, Jean Yuan, Genee Lee, Franklin V. Peale, Christiaan Klijn, Richard Bourgon, Joshua S. Kaminker, Richard M. Neve;
A resource for cell line authentication, annotation and quality control.
Nature 520:307-311(2015)

PubMed=26589293; DOI=10.1186/s13073-015-0240-5; PMCID=PMC4653878
Jelle Scholtalbers, Sebastian Boegel, Thomas Bukur, Marius Byl, Sebastian Goerges, Patrick Sorn, Martin Loewer, Ugur Sahin, John C. Castle;
TCLP: an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression.
Genome Med. 7:118.1-118.7(2015)

Cross-references
Biological sample resources BioSample; SAMN03473016
Chemistry resources PharmacoDB; HCC1493_477_2019
Encyclopedic resources Wikidata; Q54881577
Experimental variables resources EFO; EFO_0006427
Gene expression databases ArrayExpress; E-MTAB-2706
Sequence databases EGA; EGAS00001000610
EGA; EGAS00001002554
Entry history
Entry creation16-Apr-2014
Last entry update14-Aug-2025
Version number23