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Cellosaurus GM10863 (CVCL_R615)

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Cell line name GM10863
Synonyms GM10863A; CEPH 1375.02; CEPH-137502; 1375-02
Accession CVCL_R615
Resource Identification Initiative To cite this cell line use: GM10863 (RRID:CVCL_R615)
Comments Part of: CEPH/Utah pedigree cell line collection.
Part of: International Genome Sample Resource (1000 genomes project) cell lines.
Part of: International Histocompatibility Workshop cell lines.
Registration: CEPH Families Reference Panel; 137502.
Population: Caucasian; Utah residents with ancestry from Northern and Western Europe.
Virology: Contains a chromosomally integrated human herpesvirus 6B (CI-HHV-6B).
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: Genomics; Whole genome sequencing.
Omics: Transcriptomics; Microarray.
Omics: Variations; CNV analysis.
Omics: Variations; SNP array analysis.
Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178.
Cell type: B-cell; CL=CL_0000236.
Sequence variations
  • Mutation; HGNC; HGNC:2621; CYP2C19; Simple; p.Pro227Pro (c.681G>A); ClinVar=VCV000016897; Zygosity=Unspecified; Note=Cryptic splice acceptor activation. CYP2C19*2 allele (Coriell=GM10863).
HLA typing Source: IPD-IMGT/HLA=10069
Class II
HLA-DPDPB1*04:01,06:01
HLA-DQDQA1*01:01,03:01
DQB1*03:02,05:03
HLA-DRDRB1*04:04,14:04
DRB3*02
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Female
Age at sampling Age unspecified
Category Transformed cell line
Web pages Info; CEPH; -; https://www.cephb.fr/en/familles_CEPH.php
Publications

CLPUB00447
Richard A. Mulivor, Sharon F. Suchy;
1992/1993 catalog of cell lines. NIGMS human genetic mutant cell repository. 16th edition. October 1992.
(In misc. document) Institute for Medical Research (Camden, N.J.) NIH 92-2011; pp.1-918; National Institutes of Health; Bethesda; USA (1992)

PubMed=15514893; DOI=10.1086/426461; PMCID=PMC1182144
Stephanie Ann Santorico, Amy S. Leonardson, Hao-Yuan Zhu, Paige E. Cundiff, Przemyslaw Pietrusiak, Steve Edwards, John W. Phillips, Alan B. Sachs, Eric Emil Schadt;
Genetic inheritance of gene expression in human cell lines.
Am. J. Hum. Genet. 75:1094-1105(2004)

PubMed=17122850; DOI=10.1038/nature05329; PMCID=PMC2669898
Richard Redon, Shumpei Ishikawa, Karen R. Fitch, Lars Feuk, George H. Perry, T. Daniel Andrews, Heike Fiegler, Michael H. Shapero, Andrew R. Carson, Wen-Wei Chen, Eun Kyung Cho ...Show all 43 authors... , Stephanie Dallaire, Jennifer L. Freeman, Juan R. Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R. MacDonald, Christian R. Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin John Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Feng-Tang Yang, Jun-Jun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F. Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P. Carter, Hiroyuki Aburatani, Charles Lee, Keith W. Jones, Stephen Wayne Scherer, Matthew Edward Hurles; Show fewer authors
Global variation in copy number in the human genome.
Nature 444:444-454(2006)

PubMed=19043577; DOI=10.1371/journal.pgen.1000287; PMCID=PMC2583954
Edwin Choy, Roman Yelensky, Sasha Bonakdar, Robert M. Plenge, Richa Saxena, Philip Lawrence De Jager, Stanley Y. Shaw, Cara Susan Wolfish, Jacqueline M. Slavik, Chris Cotsapas, Manuel A. Rivas ...Show all 17 authors... , Emmanouil Theophilos Dermitzakis, Ellen Cahir-McFarland, Elliott Dan Kieff, David A. Hafler, Mark Joseph Daly, David Matthew Altshuler; Show fewer authors
Genetic analysis of human traits in vitro: drug response and gene expression in lymphoblastoid cell lines.
PLoS Genet. 4:e1000287.1-e1000287.16(2008)

PubMed=20856902; DOI=10.1371/journal.pbio.1000480; PMCID=PMC2939022
Vivian G. Cheung, Renuka R. Nayak, Isabel Xiao-Rong Wang, Susannah Elwyn, Sarah M. Cousins, Michael Morley, Richard Saul Spielman;
Polymorphic cis- and trans-regulation of human gene expression.
PLoS Biol. 8:e1000480.1-e1000480.14(2010)

PubMed=21397061; DOI=10.1016/j.ajhg.2011.02.004; PMCID=PMC3059424
Catarina D. Campbell, Nick Sampas, Anya Tsalenko, Peter H. Sudmant, Jeffrey M. Kidd, Maika Malig, Tiffany H. Vu, Laura Vives, Peter Tsang, Laurakay Bruhn, Evan E. Eichler;
Population-genetic properties of differentiated human copy-number polymorphisms.
Am. J. Hum. Genet. 88:317-332(2011)

PubMed=24057213; DOI=10.1093/nar/gkt840; PMCID=PMC3874159
Yan Huang, Alberto Hidalgo-Bravo, En-Jie Zhang, Victoria E. Cotton, Aaron Mendez-Bermudez, Gunjan Mukesh Wig, Zahara Medina-Calzada, Rita Neumann, Alec John Jeffreys, Bruce Winney, James F. Wilson ...Show all 14 authors... , Duncan A. Clark, Martin John Swinnerton Dyer, Nicola Jane Royle; Show fewer authors
Human telomeres that carry an integrated copy of human herpesvirus 6 are often short and unstable, facilitating release of the viral genome from the chromosome.
Nucleic Acids Res. 42:315-327(2014)

Cross-references
Cell line collections (Providers) Coriell; GM10863
Cell line databases/resources CLO; CLO_0024085
IPD-IMGT/HLA; 10069
Biological sample resources BioSample; SAMN00800290
IGSR; NA10863
Encyclopedic resources Wikidata; Q54844703
Gene expression databases GEO; GSM30097
GEO; GSM112509
GEO; GSM112789
GEO; GSM188787
GEO; GSM291620
GEO; GSM291621
GEO; GSM420644
GEO; GSM648916
GEO; GSM862008
GEO; GSM862009
GEO; GSM862010
GEO; GSM862011
GEO; GSM862012
GEO; GSM862013
Entry history
Entry creation05-Nov-2013
Last entry update10-Apr-2025
Version number29