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Cellosaurus GM18516 (CVCL_P463)

[Text version]
Cell line name GM18516
Accession CVCL_P463
Resource Identification Initiative To cite this cell line use: GM18516 (RRID:CVCL_P463)
Comments Part of: International Genome Sample Resource (1000 genomes project) cell lines.
Population: African; Yoruba in Ibadan, Nigeria (YRI).
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: Genomics; ChIP-seq; H3K27ac.
Omics: Genomics; ChIP-seq; H3K27me3.
Omics: Genomics; ChIP-seq; H3K4me1.
Omics: Genomics; ChIP-seq; H3K4me3.
Omics: Genomics; Whole genome sequencing.
Omics: Proteomics.
Omics: Transcriptomics; Microarray.
Omics: Transcriptomics; RNAseq.
Omics: Variations; CNV analysis.
Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178.
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Male
Age at sampling Age unspecified
Category Transformed cell line
Publications

PubMed=17122850; DOI=10.1038/nature05329; PMCID=PMC2669898
Richard Redon, Shumpei Ishikawa, Karen R. Fitch, Lars Feuk, George H. Perry, T. Daniel Andrews, Heike Fiegler, Michael H. Shapero, Andrew R. Carson, Wen-Wei Chen, Eun Kyung Cho ...Show all 43 authors... , Stephanie Dallaire, Jennifer L. Freeman, Juan R. Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R. MacDonald, Christian R. Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin John Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Feng-Tang Yang, Jun-Jun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F. Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P. Carter, Hiroyuki Aburatani, Charles Lee, Keith W. Jones, Stephen Wayne Scherer, Matthew Edward Hurles; Show fewer authors
Global variation in copy number in the human genome.
Nature 444:444-454(2006)

PubMed=19043577; DOI=10.1371/journal.pgen.1000287; PMCID=PMC2583954
Edwin Choy, Roman Yelensky, Sasha Bonakdar, Robert M. Plenge, Richa Saxena, Philip Lawrence De Jager, Stanley Y. Shaw, Cara Susan Wolfish, Jacqueline M. Slavik, Chris Cotsapas, Manuel A. Rivas ...Show all 17 authors... , Emmanouil Theophilos Dermitzakis, Ellen Cahir-McFarland, Elliott Dan Kieff, David A. Hafler, Mark Joseph Daly, David Matthew Altshuler; Show fewer authors
Genetic analysis of human traits in vitro: drug response and gene expression in lymphoblastoid cell lines.
PLoS Genet. 4:e1000287.1-e1000287.16(2008)

PubMed=19797678; DOI=10.1101/gr.097600.109; PMCID=PMC2775589
Renuka R. Nayak, Michael Justin Kearns, Richard Saul Spielman, Vivian G. Cheung;
Coexpression network based on natural variation in human gene expression reveals gene interactions and functions.
Genome Res. 19:1953-1962(2009)

PubMed=20220758; DOI=10.1038/nature08872; PMCID=PMC3089435
Joseph K. Pickrell, John Carlo Marioni, Athma A. Pai, Jacob F. Degner, Barbara Elizabeth Engelhardt, Everlyne Nkadori, Jean-Baptiste Veyrieras, Matthew Stephens, Yoav Gilad, Jonathan Karl Pritchard;
Understanding mechanisms underlying human gene expression variation with RNA sequencing.
Nature 464:768-772(2010)

PubMed=21397061; DOI=10.1016/j.ajhg.2011.02.004; PMCID=PMC3059424
Catarina D. Campbell, Nick Sampas, Anya Tsalenko, Peter H. Sudmant, Jeffrey M. Kidd, Maika Malig, Tiffany H. Vu, Laura Vives, Peter Tsang, Laurakay Bruhn, Evan E. Eichler;
Population-genetic properties of differentiated human copy-number polymorphisms.
Am. J. Hum. Genet. 88:317-332(2011)

PubMed=24136357; DOI=10.1126/science.1242379; PMCID=PMC3994702
Zia Khan, Michael J. Ford, Darren A. Cusanovich, Amy Mitrano, Jonathan Karl Pritchard, Yoav Gilad;
Primate transcript and protein expression levels evolve under compensatory selection pressures.
Science 342:1100-1104(2013)

PubMed=24136359; DOI=10.1126/science.1242429; PMCID=PMC3947669
Graham McVicker, Bryce van de Geijn, Jacob F. Degner, Carolyn E. Cain, Nicholas E. Banovich, Anil Raj, Noah Lewellen, Marsha Myrthil, Yoav Gilad, Jonathan Karl Pritchard;
Identification of genetic variants that affect histone modifications in human cells.
Science 342:747-749(2013)

Cross-references
Cell line collections (Providers) Coriell; GM18516
Cell line databases/resources CLO; CLO_0024892
Biological sample resources IGSR; NA18516
Encyclopedic resources Wikidata; Q54849592
Gene expression databases GEO; GSM112581
GEO; GSM112885
GEO; GSM188861
GEO; GSM273461
GEO; GSM291718
GEO; GSM315148
GEO; GSM485416
GEO; GSM485431
GEO; GSM485466
GEO; GSM485482
GEO; GSM649225
GEO; GSM649861
GEO; GSM1164206
GEO; GSM1164216
GEO; GSM1164226
GEO; GSM1164236
GEO; GSM1164246
GEO; GSM1204878
GEO; GSM1719851
Proteomic databases PRIDE; PXD000419
PRIDE; PXD001406
Entry history
Entry creation05-Nov-2013
Last entry update10-Apr-2025
Version number19