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Cellosaurus UCSD-242L (CVCL_M009)

[Text version]
Cell line name UCSD-242L
Synonyms UCSD-242l; UCSD 242L; UCSD242L
Accession CVCL_M009
Resource Identification Initiative To cite this cell line use: UCSD-242L (RRID:CVCL_M009)
Comments Omics: Genomics; Whole exome sequencing.
Omics: Transcriptomics; RNAseq.
Omics: Variations; SNP array analysis.
HLA typing Source: PubMed=26589293
Class I
HLA-AA*02:02,32:01
HLA-BB*40:02,40:02
HLA-CC*02:02,03:04
Class II
HLA-DQDQA1*01:03,03:02
DQB1*03:02,06:11
HLA-DRDRB1*04:04,13:01
Disease Melanoma (NCIt: C3224)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Sex unspecified
Age at sampling Age unspecified
Category Cancer cell line
STR profile Source(s): PubMed=25877200

Markers:
AmelogeninX
CSF1PO11
D3S135816,17
D5S81812
D7S8208
D8S117910,12
D13S3178,10
D16S5399,12,13
D18S5114,16
D21S1128,31.2
FGA20,21,23
Penta D10,12
Penta E8,10
TH019
TPOX8,9
vWA17,19

Run an STR similarity search on this cell line
Publications

PubMed=25485619; DOI=10.1038/nbt.3080
Christiaan Klijn, Steffen Durinck, Eric W. Stawiski, Peter M. Haverty, Zhao-Shi Jiang, Han-Bin Liu, Jeremiah Degenhardt, Oleg Mayba, Florian Gnad, Jin-Feng Liu, Gregoire Pau ...Show all 30 authors... , Jens Reeder, Yi Cao, Kiran Mukhyala, Suresh K. Selvaraj, Ma-Mie Yu, Gregory J. Zynda, Matthew J. Brauer, Thomas D. Wu, Robert Clifford Gentleman, Gerard Manning, Robert L. Yauch, Richard Bourgon, David Stokoe, Zora Modrusan, Richard M. Neve, Frederic J. de Sauvage, Jeffrey Settleman, Somasekar Seshagiri, Ze-Min Zhang; Show fewer authors
A comprehensive transcriptional portrait of human cancer cell lines.
Nat. Biotechnol. 33:306-312(2015)

PubMed=25877200; DOI=10.1038/nature14397
Ma-Mie Yu, Suresh K. Selvaraj, May M.Y. Liang-Chu, Sahar Aghajani, Matthew Busse, Jean Yuan, Genee Lee, Franklin V. Peale, Christiaan Klijn, Richard Bourgon, Joshua S. Kaminker, Richard M. Neve;
A resource for cell line authentication, annotation and quality control.
Nature 520:307-311(2015)

PubMed=26589293; DOI=10.1186/s13073-015-0240-5; PMCID=PMC4653878
Jelle Scholtalbers, Sebastian Boegel, Thomas Bukur, Marius Byl, Sebastian Goerges, Patrick Sorn, Martin Loewer, Ugur Sahin, John C. Castle;
TCLP: an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression.
Genome Med. 7:118.1-118.7(2015)

Cross-references
Cell line collections (Providers) NCI-DTP; UCSD 242L
Biological sample resources BioSample; SAMN03473115
Chemistry resources PharmacoDB; UCSD242l_1637_2019
Encyclopedic resources Wikidata; Q54989710
Experimental variables resources EFO; EFO_0006769
Gene expression databases ArrayExpress; E-MTAB-2706
Polymorphism and mutation databases Cosmic; 1303060
Sequence databases EGA; EGAS00001000610
EGA; EGAS00001002554
Entry history
Entry creation06-May-2013
Last entry update14-Aug-2025
Version number16