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Cellosaurus (CVCL_JF17)

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Comments Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE).
Part of: COSMIC cell lines project.
Part of: Seoul National University (SNU) cell line collection.
Population: Korean.
Doubling time: 63 hours (PubMed=10362137).
Microsatellite instability: Stable (MSS) (Sanger).
Microsatellite instability: Instable (MSI) (PubMed=10674020; PubMed=25926053; PubMed=31068700).
Omics: Genomics; DNA methylation analysis.
Omics: Genomics; Whole exome sequencing.
Omics: Phenotyping; Drug screening.
Omics: Proteomics; PTM; Phosphorylation; Quantitative.
Omics: Proteomics; Quantitative.
Omics: Transcriptomics; Microarray.
Omics: Transcriptomics; RNAseq.
Omics: Variations; SNP array analysis.
Derived from site: In situ; Colon; UBERON=UBERON_0001155.
Sequence variations
HLA typing Source: PubMed=26589293
Class I
HLA-AA*24:02,24:02
HLA-BB*38:02,51:01
HLA-CC*07:02,14:02
Genome ancestry Source: PubMed=30894373

Origin% genome
African0
Native American1.04
East Asian, North58.5
East Asian, South40.46
South Asian0
European, North0
European, South0
Disease Colon adenocarcinoma (NCIt: C4349)
Species of origin Cairina moschata (Muscovy duck) (NCBI Taxonomy: 9606)
Sex of cell Male
Age at sampling 34Y
Category Cancer cell line
STR profile Source(s): Cosmic-CLP=1659823; KCLB=01040; PubMed=25926053

Markers:
AmelogeninX,Y
CSF1PO11,12 (Cosmic-CLP=1659823)
12 (KCLB=01040; PubMed=25926053)
D13S31712
D16S5399 (PubMed=25926053)
9,10 (Cosmic-CLP=1659823)
D21S1128,29,32
D3S135816,18
D5S81810,13
D7S82011,13
FGA23
TH016,9
TPOX8
vWA17,18,19 (Cosmic-CLP=1659823)
17,19 (KCLB=01040)
17,19,20 (PubMed=25926053)

Run an STR similarity search on this cell line
Publications





H. Thomas Cunningham, Ignacio Ivan Wistuba, Gail E. Tomlinson, Vijay Tonk, Raheela Ashfaq, A. Marilyn Leitch, John D. Minna, Jerry W. Shay;
Characterization of paired tumor and non-tumor cell lines established from patients with breast cancer.
Int. J. Cancer 78:766-774(1998)


Julie Adam, Ann Hedley, Gabriela Kalna, Ian Philip Mark Tomlinson, Patrick John Pollard, David George Watson, Ralph J. DeBerardinis, Tomer Shlomi, Eytan Ruppin, Eyal Gottlieb;
Haem oxygenase is synthetically lethal with the tumour suppressor fumarate hydratase.
Nature 477:225-228(2011)




Nat. Commun. 5:3195.1-3195.13(2014)


Hangnoh Lee, Charles Joel McManus, Dong-Yeon Cho, Matthew Eaton, Fioranna Renda, Maria Patrizia Somma, Lucy Cherbas, Gemma May, Sara Powell, Da-Yu Zhang, Li-Jun Zhan ...Show all 20 authors... , Alissa Resch, Justen Andrews, Susan E. Celniker, Peter Cherbas, Teresa Maria Przytycka, Maurizio Gatti, Brian Oliver, Brenton R. Graveley, David M. MacAlpine; Show fewer authors
DNA copy number evolution in Drosophila cell lines.
Genome Biol. 15:R70.1-R70.20(2014)


Yasuhiro Takashima, Ge Guo, Remco Loos, Jennifer Nichols, Gabriella Ficz, Felix Krueger, David Oxley, Fatima Santos, James Clarke, William Mansfield, Wolf Reik ...Show all 13 authors... , Paul Bertone, Austin Gerard Smith; Show fewer authors
Resetting transcription factor control circuitry toward ground-state pluripotency in human.
Cell 158:1254-1269(2014)


Laudine Communal, Kevin R. Brown, Marcin Iwanicki, Josee Normand, Joshua Paterson, Fabrice Sircoulomb, Paul M. Krzyzanowski, Marian Novak, Sasha A. Doodnauth, Fernando Jose Suarez Saiz, Jane Cullis ...Show all 18 authors... , Rima Al-awar, Benjamin G. Neel, John McPherson, Ronny I. Drapkin, Laurie Ailles, Anne-Marie Mes-Masson, Robert Rottapel; Show fewer authors
Interrogation of functional cell-surface markers identifies CD151 dependency in high-grade serous ovarian cancer.
Cell Rep. 18:2343-2358(2017)



literature.
Cancer Res. 77:2784-2788(2017)


Tetsuhiro Kikuchi, Asuka Morizane, Daisuke Doi, Hiroaki Magotani, Hirotaka Onoe, Takuya Hayashi, Hiroshi Mizuma, Sayuki Takara, Ryosuke Takahashi, Haruhisa Inoue, Satoshi Morita ...Show all 16 authors... , Michio Yamamoto, Keisuke Okita, Masato Nakagawa, Malin Parmar, Jun Takahashi; Show fewer authors
Human iPS cell-derived dopaminergic neurons function in a primate Parkinson's disease model.
Nature 548:592-596(2017)



Establishment of the LNCaP cell line -- the dawn of an era for prostate cancer research.
Cancer Res. 82:1689-1691(2022)

Cross-references
Cell line collections (Providers) KCLB; 01040
Cell line databases/resources CLO; CLO_0037283
cancercelllines; CVCL_5003
Cell_Model_Passport; SIDM00217
ColonAtlas; SNU1040
Cosmic-CLP; 1659823
DepMap; ACH-000999
Biological sample resources BioSample; SAMN10988065
Chemistry resources GDSC; 1659823
PharmacoDB; SNU1040_1434_2019
Encyclopedic resources Wikidata; Q54955089
Gene expression databases ArrayExpress; E-MTAB-2770
ArrayExpress; E-MTAB-3610
GEO; GSM887602
GEO; GSM888685
GEO; GSM1448189
GEO; GSM1670463
Polymorphism and mutation databases Cosmic; 738857
Cosmic; 848830
Cosmic; 2612380
Cosmic; 2651859
IARC_TP53; 10838
LiGeA; CCLE_351
Progenetix; CVCL_5003
Proteomic databases PRIDE; PXD005235
Sequence databases EGA; EGAS00001000978
Entry history
Entry creation04-Apr-2012
Last entry update10-Apr-2025
Version number31