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Cellosaurus SU-DIPG-XIII (CVCL_IT41)

[Text version]
Cell line name SU-DIPG-XIII
Synonyms SU DIPG XIII; SU-DIPGXIII; SU-DIPG-13; DIPG XIII; DIPGXIII; SJHGG054833
Accession CVCL_IT41
Resource Identification Initiative To cite this cell line use: SU-DIPG-XIII (RRID:CVCL_IT41)
Comments Doubling time: 6.6 days (PubMed=34215733).
Omics: Genomics; ChIP-seq; H3K27ac.
Omics: Genomics; ChIP-seq; H3K27me3.
Omics: Genomics; Chromosome conformation analysis; Hi-C.
Omics: Transcriptomics; RNAseq.
Derived from site: In situ; Brainstem, pons; UBERON=UBERON_0000988.
Sequence variations
Disease Diffuse intrinsic pontine glioma (NCIt: C94764)
Diffuse intrinsic pontine glioma (ORDO: Orphanet_497188)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Female
Age at sampling 6Y
Category Cancer cell line
STR profile Source(s): PubMed=25939062; PubMed=28823557; PubMed=34732238

Markers:
AmelogeninX
CSF1PO9,10
D5S81812
D7S8209
D13S31711 (PubMed=34732238)
11,12 (PubMed=25939062; PubMed=28823557)
D16S53911,12
D21S1130 (PubMed=25939062; PubMed=28823557)
30,31 (PubMed=34732238)
TH016 (PubMed=34732238)
6,7 (PubMed=25939062; PubMed=28823557)
TPOX8 (PubMed=25939062; PubMed=28823557)
8,9 (PubMed=34732238)
vWA13,18 (PubMed=25939062; PubMed=28823557)
18,19 (PubMed=34732238)

Run an STR similarity search on this cell line
Publications

PubMed=25939062; DOI=10.1038/nm.3855; PMCID=PMC4862411
Catherine S. Grasso, Yu-Jie Tang, Nathalene Truffaux, Noah E. Berlow, Li-Ning Liu, Marie-Anne Debily, Michael J. Quist, Lara E. Davis, Elaine C. Huang, Pamelyn J. Woo, Anitha Ponnuswami ...Show all 40 authors... , Spenser Chen, Tessa B. Johung, Wen-Chao Sun, Mari Kogiso, Yu-Chen Du, Lin Qi, Yu-Lun Huang, Marianne Hutt-Cabezas, Katherine E. Warren, Ludivine Le Dret, Paul S. Meltzer, Hua Mao, Martha Quezado, Dannis G. van Vuurden, Jinu Abraham, Maryam Fouladi, Matthew N. Svalina, Nicholas Wang, Cynthia Hawkins, Javad Nazarian, Marta M. Alonso, Eric Hutton Raabe, Esther Hulleman, Paul T. Spellman, Xiao-Nan Li, Charles Keller, Ranadip Pal, Jacques Grill, Michelle Monje; Show fewer authors
Functionally defined therapeutic targets in diffuse intrinsic pontine glioma.
Nat. Med. 21:555-559(2015)

PubMed=26115193; DOI=10.1097/NEN.0000000000000216; PMCID=PMC4596247
Isabella C. Taylor, Marianne Hutt-Cabezas, William D. Brandt, Madhuri Kambhampati, Javad Nazarian, Howard T. Chang, Katherine E. Warren, Charles George Eberhart, Eric Hutton Raabe;
Disrupting NOTCH slows diffuse intrinsic pontine glioma growth, enhances radiation sensitivity, and shows combinatorial efficacy with bromodomain inhibition.
J. Neuropathol. Exp. Neurol. 74:778-790(2015)

PubMed=28823557; DOI=10.1016/j.cell.2017.07.016; PMCID=PMC5587159
Elizabeth Y. Qin, Dominique D. Cooper, Keene L. Abbott, James Lennon, Surya Nagaraja, Alan Mackay, Chris Jones, Hannes Vogel, Peter K. Jackson, Michelle Monje;
Neural precursor-derived pleiotrophin mediates subventricular zone invasion by glioma.
Cell 170:845-859.e19(2017)

PubMed=31439867; DOI=10.1038/s41467-019-11732-6; PMCID=PMC6706443
Nathan R. Fons, Ranjini K. Sundaram, Gregory A. Breuer, Sen Peng, Ryan L. McLean, Aravind N. Kalathil, Mark S. Schmidt, Diana M. Carvalho, Alan Mackay, Chris Jones, Angel Montero Carcaboso ...Show all 15 authors... , Javad Nazarian, Michael E. Berens, Charles Brenner, Ranjit S. Bindra; Show fewer authors
PPM1D mutations silence NAPRT gene expression and confer NAMPT inhibitor sensitivity in glioma.
Nat. Commun. 10:3790.1-3790.10(2019)

PubMed=33319914; DOI=10.1093/gigascience/giaa136; PMCID=PMC7736793
Lauren M. Sanders, Allison Cheney, Lucas Seninge, Anouk van den Bout, Marissa Chen, Holly Conley Beale, Ellen Towle Kephart, Jacob Pfeil, Katrina Learned, A. Geoffrey Lyle, Isabel Bjork ...Show all 14 authors... , David Haussler, Sofie Reda Salama, Olena M. Vaske; Show fewer authors
Identification of a differentiation stall in epithelial mesenchymal transition in histone H3-mutant diffuse midline glioma.
GigaScience 9:giaa136.1-giaa136.14(2020)

PubMed=34078608; DOI=10.1126/sciadv.abg4126; PMCID=PMC10166578
Juan Wang, Tina Yi-Ting Huang, Ye Hou, Elizabeth Thomas Bartom, Xin-Yan Lu, Ali Shilatifard, Feng Yue, Amanda Muhs Saratsis;
Epigenomic landscape and 3D genome structure in pediatric high-grade glioma.
Sci. Adv. 7:eabg4126.1-eabg4126.16(2021)

PubMed=34215733; DOI=10.1038/s41467-021-24168-8; PMCID=PMC8253809
Chen He, Ke Xu, Xiao-Yan Zhu, Paige S. Dunphy, Brian Gudenas, Wen-Wei Lin, Nathaniel Twarog, Laura D. Hover, Chang-Hyuk Kwon, Lawryn Heath Kasper, Jun-Yuan Zhang ...Show all 40 authors... , Xiao-Yu Li, James Dalton, Barbara Jonchere, Kimberly S. Mercer, Duane G. Currier, William Caufield, Ying-Zhe Wang, Jia Xie, Alberto Broniscer, Cynthia Wetmore, Santhosh A. Upadhyaya, Ibrahim Qaddoumi, Paul Klimo, Frederick A. Boop, Amar Gajjar, Jing-Hui Zhang, Brent A. Orr, Giles W. Robinson, Michelle Monje, Burgess B. Freeman 3rd, Martine Francoise Roussel, Paul A. Northcott, Tao-Sheng Chen, Zoran Rankovic, Gang Wu, Jason Cheng-Hsuan Chiang, Christopher L. Tinkle, Anang A. Shelat, Suzanne J. Baker; Show fewer authors
Patient-derived models recapitulate heterogeneity of molecular signatures and drug response in pediatric high-grade glioma.
Nat. Commun. 12:4089.1-4089.17(2021)

PubMed=34732238; DOI=10.1186/s40478-021-01270-y; PMCID=PMC8565061
Cheng Xu, Heng Liu, Christopher J. Pirozzi, Lee H. Chen, Paula K. Greer, Bill H. Diplas, Li-Wei Zhang, Matthew S. Waitkus, Yi-Ping He, Hai Yan;
TP53 wild-type/PPM1D mutant diffuse intrinsic pontine gliomas are sensitive to a MDM2 antagonist.
Acta Neuropathol. Commun. 9:178.1-178.12(2021)

Cross-references
Cell line databases/resources cancercelllines; CVCL_IT41
Encyclopedic resources Wikidata; Q54970736
Gene expression databases GEO; GSM4969590
GEO; GSM4969591
GEO; GSM4969592
GEO; GSM4969593
GEO; GSM4969619
GEO; GSM4969628
GEO; GSM4969629
GEO; GSM4969630
GEO; GSM4969657
GEO; GSM5356026
Entry history
Entry creation03-Mar-2017
Last entry update10-Apr-2025
Version number14