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Cellosaurus 287954-098-R-J1-PDC (CVCL_F4D9)

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Cell line name 287954-098-R-J1-PDC
Accession CVCL_F4D9
Resource Identification Initiative To cite this cell line use: 287954-098-R-J1-PDC (RRID:CVCL_F4D9)
Comments Part of: NCI Patient-Derived Model Repository.
Population: Caucasian; Utah residents with ancestry from Northern and Western Europe.
Characteristics: tumorigenic in NOD/SCID/IL2RgammaNULL (NSG) mice.
Doubling time: 17 hours (NCI-PDMR=3552).
Microsatellite instability: Stable (MSS) (NCI-PDMR=3552).
Omics: Genomics; Whole exome sequencing.
Omics: Transcriptomics; RNAseq.
Derived from site: Metastatic; Pelvis; UBERON=UBERON_0002355.
Sequence variations
  • Mutation; HGNC; HGNC:11110; ARID1A; Simple; p.N2066Tfs*36 (c.6196_6197insCCACTCGCCA); Zygosity=Heterozygous; Note=Likely Oncogenic, variant allele frequency: 0.373 (NCI-PDMR=3552).
  • Mutation; HGNC; HGNC:11998; TP53; Simple; p.R156P (c.467G>C); Zygosity=Homozygous; Note=Likely Oncogenic, variant allele frequency: 1 (NCI-PDMR=3552).
  • Mutation; HGNC; HGNC:12363; TSC2; Simple; p.N778Tfs*40 (c.2332_2333insC); Zygosity=Heterozygous; Note=Likely Oncogenic, variant allele frequency: 0.2541 (NCI-PDMR=3552).
  • Mutation; HGNC; HGNC:12363; TSC2; Simple; p.N778Kfs*41 (c.2333_2334insAAAC); Zygosity=Heterozygous; Note=Likely Oncogenic, variant allele frequency: 0.2527 (NCI-PDMR=3552).
HLA typing Source: NCI-PDMR=3552
Class I
HLA-AA*02:01,03:01
HLA-BB*39:01,40:01
HLA-CC*03:04,12:03
Disease Ewing Sarcoma (NCIt: C4817)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Male
Age at sampling 32Y
Category Cancer cell line
STR profile Source(s): NCI-PDMR=3552

Markers:
AmelogeninX,Y
CSF1PO10,13
D2S133824,25
D3S135816,18
D5S81812,13
D7S8209,10
D8S117910,14
D13S31712
D16S53912,13
D18S5113,19
D19S43314
D21S1129,30.2
FGA20,21
TH016
TPOX8,12
vWA16

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Cross-references
Cell line collections (Providers) NCI-PDMR; 3552
Entry history
Entry creation25-Jun-2026
Last entry update25-Jun-2026
Version number1