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Cellosaurus NZM003 (CVCL_D828)

[Text version]
Cell line name NZM003
Synonyms NZM03; NZM3
Accession CVCL_D828
Resource Identification Initiative To cite this cell line use: NZM003 (RRID:CVCL_D828)
Comments Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE).
Doubling time: 40.8 hours (CelloPub=CLPUB00227); 44-48 hours (CBA=CBA-1392).
Omics: Genomics; Whole exome sequencing.
Omics: Transcriptomics; Microarray.
Omics: Transcriptomics; RNAseq.
Caution: The results of the Sequenom MassARRAY used in PubMed=32567790 contradicts the whole exome sequencing data for BRAF and indicates a p.Val600Lys (c.1798_1799delGTinsAA) variant.
Derived from site: Metastatic; Cervical lymph node; UBERON=UBERON_0002429.
Sequence variations
HLA typing Source: PubMed=32567790
Class I
HLA-AA*01:01,02:01
HLA-BB*08:01,27:05
HLA-CC*02:02,07:01
Disease Melanoma (NCIt: C3224)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Male
Age at sampling 69Y
Category Cancer cell line
STR profile Source(s): CBA=CBA-1392; DepMap=ACH-001982; PubMed=32567790

Markers:
AmelogeninX,Y
CSF1PO11
D2S133822,24
D3S135817
D5S81812
D7S8209,10 (CBA=CBA-1392; DepMap=ACH-001982)
10 (PubMed=32567790)
D8S117913,14
D13S31712
D16S53911,13
D18S5112,18
D19S43312,15
D21S1129,30.2
FGA20,22
Penta D9
Penta E10,14
TH019
TPOX8
vWA15,17

Run an STR similarity search on this cell line
Publications

PubMed=7999427; DOI=10.1016/0959-8049(94)90188-0
Elaine S. Marshall, John H.L. Matthews, James H.F. Shaw, Johanna Nixon, Paul Tumewu, Graeme John Finlay, Karen M. Holdaway, Bruce Charles Baguley;
Radiosensitivity of new and established human melanoma cell lines: comparison of [3H]thymidine incorporation and soft agar clonogenic assays.
Eur. J. Cancer 30A:1370-1376(1994)

PubMed=11216673; DOI=10.3727/096504001108747620
Jayamala Parmar, Elaine S. Marshall, Geoffrey A. Charters, Karen M. Holdaway, Andrew N. Shelling, Bruce Charles Baguley;
Radiation-induced cell cycle delays and p53 status of early passage melanoma cell lines.
Oncol. Res. 12:149-155(2000)

PubMed=20041153; DOI=10.1371/journal.pone.0008461; PMCID=PMC2794539
Aaron R. Jeffs, Amy C. Glover, Lynn J. Slobbe, Li Wang, Shu-Jie He, Jody A. Hazlett, Anshul Awasthi, Adele G. Woolley, Elaine S. Marshall, Wayne R. Joseph, Cristin Gregor Print ...Show all 13 authors... , Bruce Charles Baguley, Michael R. Eccles; Show fewer authors
A gene expression signature of invasive potential in metastatic melanoma cells.
PLoS ONE 4:e8461.1-e8461.11(2009)

CLPUB00227
Liene Daukste;
Mathematical modelling of cancer cell population dynamics.
Thesis PhD (2012); University of Canterbury; Christchurch; New Zealand

PubMed=22475322; DOI=10.1186/1471-2407-12-141; PMCID=PMC3352269
Ji Eun Kim, Clare J. Stones, Wayne R. Joseph, Euphemia Yee Leung, Graeme John Finlay, Andrew N. Shelling, Wayne A. Phillips, Peter R. Shepherd, Bruce Charles Baguley;
Comparison of growth factor signalling pathway utilisation in cultured normal melanocytes and melanoma cell lines.
BMC Cancer 12:141.1-141.10(2012)

PubMed=23658559; DOI=10.3389/fgene.2013.00066; PMCID=PMC3647113
Clare J. Stones, Ji Eun Kim, Wayne R. Joseph, Euphemia Yee Leung, Elaine S. Marshall, Graeme John Finlay, Andrew N. Shelling, Bruce Charles Baguley;
Comparison of responses of human melanoma cell lines to MEK and BRAF inhibitors.
Front. Genet. 4:66.1-66.6(2013)

PubMed=23755070; DOI=10.3389/fgene.2013.00097; PMCID=PMC3668138
Ji Eun Kim, Euphemia Yee Leung, Bruce Charles Baguley, Graeme John Finlay;
Heterogeneity of expression of epithelial-mesenchymal transition markers in melanocytes and melanoma cell lines.
Front. Genet. 4:97.1-97.8(2013)

PubMed=24455489; DOI=10.3389/fonc.2013.00333; PMCID=PMC3888952
Stacey Ann N. D'mello, Jack U. Flanagan, Taryn N. Green, Euphemia Yee Leung, Marjan E. Askarian-Amiri, Wayne R. Joseph, Michael R. McCrystal, Richard J. Isaacs, James H.F. Shaw, Christopher E. Furneaux, Matthew John During ...Show all 14 authors... , Graeme John Finlay, Bruce Charles Baguley, Maggie Lucy Kalev-Zylinska; Show fewer authors
Evidence that GRIN2A mutations in melanoma correlate with decreased survival.
Front. Oncol. 3:333.1-333.9(2014)

PubMed=32567790; DOI=10.1111/pcmr.12908; PMCID=PMC7818249
Khanh B. Tran, Gregory Gimenez, Peter Tsai, Sharada Kolekar, Euan J. Rodger, Aniruddha Chatterjee, Anower Jabed, Jen-Hsing Shih, Wayne R. Joseph, Elaine S. Marshall, Qian Wang ...Show all 15 authors... , Cristin Gregor Print, Michael R. Eccles, Bruce Charles Baguley, Peter R. Shepherd; Show fewer authors
Genomic and signalling pathway characterization of the NZM panel of melanoma cell lines: a valuable model for studying the impact of genetic diversity in melanoma.
Pigment Cell Melanoma Res. 34:136-143(2021)

Cross-references
Cell line collections (Providers) CBA; CBA-1392
Cell line databases/resources cancercelllines; CVCL_D828
DepMap; ACH-001982
Biological sample resources BioSample; SAMN07624443
BioSample; SAMN14558314
Encyclopedic resources Wikidata; Q54931561
Polymorphism and mutation databases Cosmic; 1660299
Cosmic; 2007644
Cosmic; 2406331
Entry history
Entry creation22-Oct-2012
Last entry update10-Apr-2025
Version number23