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Cellosaurus (CVCL_C994)

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Comments Part of: ENCODE project common cell types; tier 3.
Population: Japanese.
Doubling time: 36 hours (Note=At 9th passage), 29 hours (Note=At 40th passage), 27 hours (Note=At 50th passage) (DOI=10.1007/978-4-431-53981-0_2); 35.14 +- 2.68 hours (PubMed=23255909).
Omics: Genomics; ChIP-seq; H3K27ac.
Omics: Genomics; Chromatin accessibility; ATAC-seq.
Omics: Genomics; Whole exome sequencing.
Omics: Phenotyping; CRISPR screening.
Omics: Transcriptomics; Microarray.
Omics: Transcriptomics; RNAseq.
Omics: Variations; Array-based CGH.
Omics: Variations; SNP array analysis.
Miscellaneous: DepMap data are indicated for Ishidisconkawa (Heraklio) 02 ER- (CVCL_6543), but the referenced ECACC provider corresponds to Ishikawa (CVCL_2529).
Misspelling: Ischikawaa; Note=Occasionally.
Derived from site: In situ; Endometrium; UBERON=UBERON_0001295.
Sequence variations
  • Mutation; HGNC; HGNC:8979; PIK3R1; Simple; p.Leu570Pro (c.1709T>C); Zygosity=Heterozygous (DepMap=ACH-000961).
  • Mutation; HGNC; HGNC:9177; POLE; Simple; p.Pro102Ser (c.304C>T); Zygosity=Heterozygous (DepMap=ACH-000961).
  • Mutation; HGNC; HGNC:9177; POLE; Simple; p.Asn751fs (c.2252delA); Zygosity=Heterozygous (DepMap=ACH-000961).
  • Mutation; HGNC; HGNC:9588; PTEN; Simple; p.Glu288fs*3 (c.863delA); Zygosity=Heterozygous (DepMap=ACH-000961).
  • Mutation; HGNC; HGNC:9588; PTEN; Simple; p.Ser302fs*4 (c.906delC); Zygosity=Heterozygous (PubMed=20944090).
  • Mutation; HGNC; HGNC:9588; PTEN; Simple; p.Thr319fs*1 (c.950_953delTACT) (p.VL317fs) (V317fs*3); Zygosity=Heterozygous (PubMed=20944090).
  • Mutation; HGNC; HGNC:11998; TP53; Simple; p.Asp49His (c.145G>C); ClinVar=VCV000135948; Zygosity=Heterozygous (DepMap=ACH-000961).
  • Mutation; HGNC; HGNC:11998; TP53; Simple; p.Met246Val (c.736A>G); ClinVar=VCV000100815; Zygosity=Heterozygous (PubMed=15901131).
Disease Type I endometrial adenocarcinoma (NCIt: C40145)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Female
Age at sampling 39Y
Category Cancer cell line
STR profile Source(s): ECACC=99040201; PubMed=25877200; DepMap=ACH-000961

Markers:
AmelogeninX
CSF1PO11,12
D2S133820
D3S135815,16,17 (DepMap=ACH-000961)
15,17 (PubMed=25877200)
D5S81810,11 (PubMed=25877200)
10,11,12 (DepMap=ACH-000961)
D7S8209,10
D8S117912,16
D13S3179,12 (ECACC=99040201; PubMed=25877200)
9,12,13 (DepMap=ACH-000961)
D16S5399
D18S5113,14,18,19,20 (DepMap=ACH-000961)
13,19 (PubMed=25877200)
D19S43312.2,14
D21S1128
FGA20,21 (DepMap=ACH-000961)
21 (PubMed=25877200)
Penta D10,11
Penta E11,12,18,19,20 (DepMap=ACH-000961)
11,19 (PubMed=25877200)
TH019,10
TPOX8
vWA14,16,17,18 (DepMap=ACH-000961)
14,17 (ECACC=99040201; PubMed=25877200)

Run an STR similarity search on this cell line
Web pages Info; ENCODE; -; http://genome.ucsc.edu/ENCODE/protocols/cell/human/Ishikawa_Crawford_protocol.pdf
Publications





Peter E. Goretzki, Quan-Yang Duh, Orlo Herrick Clark;
Actin architecture of cultured human thyroid cancer cells: predictor of differentiation?
Surgery 108:986-993(1990)


Kazuo Tabuchi, Mamoru Oh-uchida, Kiyonobu Ikezaki, Tatsumi Hirotsu, Katsuji Hori;
The influence of MHC class I expression on the growth of a glioblastoma cell line.
(In book chapter) Biological aspects of brain tumors. Proceedings of the 8th Nikko brain tumor conference, Karatsu (Saga) 1990; Tabuchi, Kazuo (eds.); pp.374-379; Springer; Tokyo; Japan (1991)



carcinoma cell line, OVISE.
Nihon Rinsho Saibo Gakkai Zasshi 31:966-972(1992)



p53 functional loss in a colon cancer cell line with two missense mutations (218leu and 248trp) on separate alleles.
Cancer Lett. 98:183-191(1996)


Eizo Kimura, Makoto Yasuda, Tadao Tanaka, Hiroshi Ishikawa;
Establishment and characterization of cell lines derived from serous adenocarcinoma (JHOS-2) and clear cell adenocarcinoma (JHOC-5, JHOC-6) of human ovary.
Hum. Cell 12:131-138(1999)


Jun Cheng, Satoshi Maruyama, Kazufumi Ohshiro, Ichiro Suzuki, Yukiko Hoshina, Takashi Saku;
Establishment and characterization of new cell lines derived from melanotic neuroectodermal tumor of infancy arising in the mandible.
Pathol. Int. 55:331-342(2005)




Eur. J. Cell Biol. 86:221-232(2007)


Louis Guillou, Philippe Terrier, Alain Aurias;
Strong smooth muscle differentiation is dependent on myocardin gene amplification in most human retroperitoneal leiomyosarcomas.
Cancer Res. 69:2269-2278(2009)


Anders Rosen, Ann-Charlotte Bergh, Peter Gogolak, Chamilly Evaldsson, Anna Lanemo Myhrinder, Eva Hellqvist, Abu Rasul, Magnus Bjorkholm, Mattias Jansson, Larry Mansouri, An-Quan Liu ...Show all 14 authors... , Bin Tean Teh, Richard Rosenquist, Eva Klein; Show fewer authors
Lymphoblastoid cell line with B1 cell characteristics established from a chronic lymphocytic leukemia clone by in vitro EBV infection.
OncoImmunology 1:18-27(2012)


Pedro G. Ferreira, Matthias Barann, Thomas Wieland, Liliana Greger, Maarten van Iterson, Jonas Carlsson Almlof, Paolo Ribeca, Irina Pulyakhina, Daniela Esser, Thomas Giger, Andrew Tikhonov ...Show all 48 authors... , Marc Sultan, Gabrielle Bertier, Daniel Geoffrey MacArthur, Monkol Lek, Esther Lizano, Henk P.J. Buermans, Ismael Padioleau, Thomas Schwarzmayr, Olof Karlberg, Halit Ongen, Helena Kilpinen, Sergi Beltran, Marta Gut, Katja Kahlem, Vyacheslav Amstislavskiy, Oliver Stegle, Matti Pirinen, Stephen B. Montgomery, Peter Donnelly, Mark Ian McCarthy, Paul Flicek, Tim-Matthias Strom, Hans Lehrach, Stefan Schreiber, Ralf Sudbrak, Angel Carracedo, Stylianos E. Antonarakis, Robert Hasler, Ann-Christine Syvanen, Gert-Jan B. van Ommen, Alvis Brazma, Thomas Meitinger, Philip Rosenstiel, Roderic Guigo, Ivo G. Gut, Xavier Estivill, Emmanouil Theophilos Dermitzakis; Show fewer authors
Geuvadis Consortium
Transcriptome and genome sequencing uncovers functional variation in humans.
Nature 501:506-511(2013)


Yasuhiro Takashima, Ge Guo, Remco Loos, Jennifer Nichols, Gabriella Ficz, Felix Krueger, David Oxley, Fatima Santos, James Clarke, William Mansfield, Wolf Reik ...Show all 13 authors... , Paul Bertone, Austin Gerard Smith; Show fewer authors
Resetting transcription factor control circuitry toward ground-state pluripotency in human.
Cell 158:1254-1269(2014)


Venkat Swaroop Achuta, Tommi Moykkynen, Ulla-Kaisa Peteri, Giorgio Turconi, Claudio Rivera-Baeza, Kari Pekka Keinanen, Maija L. Castren;
Functional changes of AMPA responses in human induced pluripotent stem cell-derived neural progenitors in fragile X syndrome.
Sci. Signal. 11:eaan8784.1-eaan8784.11(2018)


Mark A. Russell, Sarah J. Richardson, Noel G. Morgan;
Investigation of the utility of the 1.1B4 cell as a model human beta cell line for study of persistent enteroviral infection.
Sci. Rep. 11:15624.1-15624.13(2021)

Cross-references
Cell line collections (Providers) ECACC; 99040201
EDITGENE; EDC00203
Ubigene; YC-D023
Cell line databases/resources DepMap; ACH-000961
LINCS_HMS; 50018
LINCS_LDP; LCL-1497
TOKU-E; 3966
Biological sample resources ENCODE; ENCBS228AAA
ENCODE; ENCBS229AAA
ENCODE; ENCBS230AAA
Chemistry resources PharmacoDB; Ishikawa_667_2019
PubChem_Cell_line; CVCL_2529
Encyclopedic resources Wikidata; Q54898281
Gene expression databases GEO; GSM374972
GEO; GSM375431
GEO; GSM827370
GEO; GSM1008593
GEO; GSM1008594
GEO; GSM1669941
GEO; GSM3161714
GEO; GSM3161715
GEO; GSM6421758
GEO; GSM6421759
GEO; GSM6421760
GEO; GSM6421769
GEO; GSM6421770
GEO; GSM6421771
GEO; GSM6421772
GEO; GSM6421773
GEO; GSM6421774
GEO; GSM6421775
GEO; GSM6421776
GEO; GSM6727286
GEO; GSM6727287
Polymorphism and mutation databases Cosmic; 1696753
Cosmic; 2030475
Cosmic; 2464666
Cosmic; 2646616
Cosmic; 2702440
IARC_TP53; 1112
Progenetix; CVCL_2529
Sequence databases EGA; EGAS00001000978
Entry history
Entry creation04-Apr-2012
Last entry update25-Jun-2026
Version number40