| Cell line name |
PD42 |
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| Accession |
CVCL_B4UI |
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| Resource Identification Initiative |
To cite this cell line use: PD42 (RRID:CVCL_B4UI) |
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| Comments |
From: Ludwig Institute for Cancer Research, Lausanne Branch; Lausanne; Switzerland.
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: Proteomics; HLA class I peptidome.
Omics: Proteomics; HLA class II peptidome.
Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178. |
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| HLA typing |
Source: PubMed=28832583
| Class I | | HLA-A | A*02:06,24:02 | | HLA-B | B*07:02,55:01 | | HLA-C | C*01:02,07:02 |
Source: PubMed=31611696
| Class II | | HLA-DP | DPA1*01:03,02:02 | | DPB1*04:01,05:01 | | HLA-DQ | DQA1*01:01,01:02 | | DQB1*05:01,06:02 | | HLA-DR | DRB1*01:02,15:01 | | DRB5*01:01 |
|
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| Species of origin |
Homo sapiens (Human)
(NCBI Taxonomy: 9606) |
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| Sex of cell |
Sex unspecified |
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| Age at sampling |
Age unspecified |
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| Category |
Transformed cell line |
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| Publications | PubMed=28832583; DOI=10.1371/journal.pcbi.1005725; PMCID=PMC5584980
Michal Bassani-Sternberg, Chloe Chong, Philippe Guillaume, Marthe Solleder, HuiSong Pak, Philippe O. Gannon, Lana E. Kandalaft, George Coukos, David Gfeller;
Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity.
PLoS Comput. Biol. 13:e1005725.1-e1005725.28(2017) PubMed=29242379; DOI=10.1074/mcp.TIR117.000383; PMCID=PMC5836376
Chloe Chong, Fabio Marino, HuiSong Pak, Julien Racle, Roy Thomas Daniel, Markus Muller, David Gfeller, George Coukos, Michal Bassani-Sternberg;
High-throughput and sensitive immunopeptidomics platform reveals profound interferon gamma-mediated remodeling of the human leukocyte antigen (HLA) ligandome.
Mol. Cell. Proteomics 17:533-548(2018) PubMed=31611696; DOI=10.1038/s41587-019-0289-6
Julien Racle, Justine Michaux, Georg Alexander Rockinger, Marion Arnaud, Sara Bobisse, Chloe Chong, Philippe Guillaume, George Coukos, Alexandre Harari, Camilla Jandus, Michal Bassani-Sternberg, David Gfeller;
Robust prediction of HLA class II epitopes by deep motif deconvolution of immunopeptidomes.
Nat. Biotechnol. 37:1283-1286(2019) |
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| Cross-references |
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| Encyclopedic resources |
Wikidata; Q110433133
|
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| Proteomic databases |
PRIDE; PXD006939
PRIDE; PXD012308
|
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| Entry history |
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| Entry creation | 16-Dec-2021 |
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| Last entry update | 10-Apr-2025 |
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| Version number | 6 |
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