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Cellosaurus CD165 (CVCL_B4UF)

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Cell line name CD165
Accession CVCL_B4UF
Resource Identification Initiative To cite this cell line use: CD165 (RRID:CVCL_B4UF)
Comments From: Ludwig Institute for Cancer Research, Lausanne Branch; Lausanne; Switzerland.
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: Proteomics; HLA class I peptidome.
Omics: Proteomics; HLA class II peptidome.
Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178.
HLA typing Source: PubMed=28832583
Class I
HLA-AA*02:05,24:02
HLA-BB*15:01,50:01
HLA-CC*03:03,06:02

Source: PubMed=31611696
Class II
HLA-DPDPA1*01:03
DPB1*04:01(105:01),04:02(126:01)
HLA-DQDQA1*05:05
DQB1*03:01
HLA-DRDRB1*11:01
DRB3*02:02
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Sex unspecified
Age at sampling Age unspecified
Category Transformed cell line
Publications

PubMed=28832583; DOI=10.1371/journal.pcbi.1005725; PMCID=PMC5584980
Michal Bassani-Sternberg, Chloe Chong, Philippe Guillaume, Marthe Solleder, HuiSong Pak, Philippe O. Gannon, Lana E. Kandalaft, George Coukos, David Gfeller;
Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity.
PLoS Comput. Biol. 13:e1005725.1-e1005725.28(2017)

PubMed=29242379; DOI=10.1074/mcp.TIR117.000383; PMCID=PMC5836376
Chloe Chong, Fabio Marino, HuiSong Pak, Julien Racle, Roy Thomas Daniel, Markus Muller, David Gfeller, George Coukos, Michal Bassani-Sternberg;
High-throughput and sensitive immunopeptidomics platform reveals profound interferon gamma-mediated remodeling of the human leukocyte antigen (HLA) ligandome.
Mol. Cell. Proteomics 17:533-548(2018)

PubMed=31611696; DOI=10.1038/s41587-019-0289-6
Julien Racle, Justine Michaux, Georg Alexander Rockinger, Marion Arnaud, Sara Bobisse, Chloe Chong, Philippe Guillaume, George Coukos, Alexandre Harari, Camilla Jandus, Michal Bassani-Sternberg, David Gfeller;
Robust prediction of HLA class II epitopes by deep motif deconvolution of immunopeptidomes.
Nat. Biotechnol. 37:1283-1286(2019)

Cross-references
Encyclopedic resources Wikidata; Q110432690
Proteomic databases PRIDE; PXD006939
PRIDE; PXD012308
Entry history
Entry creation16-Dec-2021
Last entry update10-Apr-2025
Version number6