Cellosaurus cell line Yamato-SS (CVCL

Cellosaurus Yamato-SS (CVCL_6C44)

[Text version]

Cell line name

Yamato-SS

Synonyms

YAMATO; Yamato

Accession

CVCL_6C44

Resource Identification Initiative

To cite this cell line use: Yamato-SS (RRID:CVCL_6C44)

Comments

Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE).
Population: Japanese.
Omics: Genomics; Whole exome sequencing.
Omics: Transcriptomics; RNAseq.
Derived from site: Metastatic; Lung; UBERON=UBERON_0002048.

Sequence variations

Gene fusion; HGNC; HGNC:11340; SS18 + HGNC; HGNC:11335; SSX1; Name(s)=SS18-SSX1 (PubMed=20518020; DepMap=ACH-001277).
Mutation; HGNC; HGNC:11998; TP53; Simple; p.Arg273Cys (c.817C>T); ClinVar=VCV000043594; Zygosity=Homozygous (DepMap=ACH-001277).

Disease

Biphasic synovial sarcoma (NCIt: C4279)
Synovial sarcoma (ORDO: Orphanet_3273)

Species of origin

Homo sapiens (Human) (NCBI Taxonomy: 9606)

Sex of cell

Male

Age at sampling

30Y

Category

Cancer cell line

STR profile

Source(s): RCB=RCB3577

Markers:

Amelogenin	X,Y
CSF1PO	10
D5S818	12
D7S820	10,12
D13S317	8,11
D16S539	9,12
TH01	7,9
TPOX	8,11
vWA	14,18

Publications

PubMed=20518020; DOI=10.1002/stem.452
Norifumi Naka, Satoshi Takenaka, Nobuhito Araki, Toshitada Miwa, Nobuyuki Hashimoto, Kiyoko Yoshioka, Susumu Joyama, Ken-ichiro Hamada, Yoshitane Tsukamoto, Yasuhiko Tomita, Takafumi Ueda ...Show all 13 authors... , Hideki Yoshikawa, Kazuyuki Itoh; Show fewer authors
Synovial sarcoma is a stem cell malignancy.
Stem Cells 28:1119-1131(2010)

Cross-references

Cell line collections (Providers)

RCB; RCB3577

Cell line databases/resources

cancercelllines; CVCL_6C44
Cell_Model_Passport; SIDM01410
DepMap; ACH-001277

Chemistry resources

PharmacoDB; YAMATO_1678_2019

Encyclopedic resources

Wikidata; Q54995208

Experimental variables resources

EFO; EFO_0022538

Gene expression databases