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Cellosaurus U-CH1 (CVCL_4988)

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Cell line name U-CH1
Synonyms UCH-1; UCH1
Accession CVCL_4988
Resource Identification Initiative To cite this cell line use: U-CH1 (RRID:CVCL_4988)
Comments Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE).
Part of: ENCODE project common cell types; tier 3.
Doubling time: ~1 week (Note=But can be significantly longer after recovery from liquid nitrogen freezing) (DSMZ=ACC-748); 2 days (PubMed=26183925); 9 days (Chordoma Foundation).
Omics: Genomics; DNA methylation analysis.
Omics: Genomics; Whole exome sequencing.
Omics: Genomics; Whole genome sequencing.
Omics: Phenotyping; Drug screening.
Omics: Transcriptomics; Microarray.
Omics: Transcriptomics; RNAseq.
Omics: Variations; CNV analysis.
Derived from site: In situ; Bone, sacrum; UBERON=UBERON_0003690.
Sequence variations
HLA typing Source: Chordoma Foundation
Class I
HLA-AA*2
Disease Sacral chordoma (NCIt: C129927)
Chordoma (ORDO: Orphanet_178)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Hierarchy Children:
CVCL_4990 (U-CH1-N)
Sex of cell Male
Age at sampling 56Y
Category Cancer cell line
STR profile Source(s): ATCC=CRL-3217; DSMZ=ACC-748; PubMed=21253487; PubMed=26183925; PubMed=27102572; PubMed=28835717

Markers:
AmelogeninX,Y
CSF1PO10,11
D1S165616,16.3
D2S44112,14
D2S133817,18
D3S135815
D5S81811,12
D7S8209,12
D8S117910,15
D10S124815
D12S39117,22
D13S31711,13
D16S53912,13
D18S5115
D19S43314
D21S1128,29
D22S104516
FGA20,21
Penta D11
Penta E7,10
TH017
TPOX8,11
vWA17

Run an STR similarity search on this cell line
Web pages Info; Chordoma Foundation; -; https://www.chordomafoundation.org/researchers/disease-models/u-ch1/
Info; ENCODE; -; http://genome.ucsc.edu/ENCODE/protocols/cell/human/UCH1_Crawford_protocol.pdf
Publications

PubMed=11579460; DOI=10.1002/gcc.1184
Stefanie Scheil, Silke Bruderlein, Thomas Liehr, Heike Starke, Jochen Herms, Michael Schulte, Peter Moller;
Genome-wide analysis of sixteen chordomas by comparative genomic hybridization and cytogenetics of the first human chordoma cell line, U-CH1.
Genes Chromosomes Cancer 32:203-211(2001)

PubMed=20461036; DOI=10.1097/BRS.0b013e3181c2a8b0; PMCID=PMC3769690
Cao Yang, Francis John Hornicek, Kirkham B. Wood, Joseph H. Schwab, Edwin Choy, Anthony John Iafrate, Andrew E. Rosenberg, Gunnlaugur Petur Nielsen, Ramnik J. Xavier, Henry J. Mankin, Zhen-Feng Duan;
Characterization and analysis of human chordoma cell lines.
Spine 35:1257-1264(2010)

PubMed=21253487; DOI=10.1155/2010/630129; PMCID=PMC3022207
Silke Bruderlein, Joshua B. Sommer, Paul S. Meltzer, Su-Feng Li, Takuya Osada, David Ng, Peter Moller, David A. Alcorta, Michael J. Kelley;
Molecular characterization of putative chordoma cell lines.
Sarcoma 2010:630129.1-630129.14(2010)

PubMed=23325432; DOI=10.1101/gr.147942.112; PMCID=PMC3589544
Katherine E. Varley, Jason Gertz, Kevin M. Bowling, Stephanie L. Parker, Timothy E. Reddy, Florencia Pauli-Behn, Marie K. Cross, Brian A. Williams, John A. Stamatoyannopoulos, Gregory E. Crawford, Devin Michael Absher, Barbara Jane Wold, Richard M. Myers; Show fewer authors ...Show all 13 authors...
Dynamic DNA methylation across diverse human cell lines and tissues.
Genome Res. 23:555-567(2013)

PubMed=26183925; DOI=10.1158/0008-5472.CAN-14-3270
Adrian von Witzleben, Lukas T. Goerttler, Ralf Marienfeld, Holger Barth, Andre Lechel, Kevin Mellert, Michael Bohm, Marko Kornmann, Regine Mayer-Steinacker, Alexandra von Baer, Markus Schultheiss, Adrienne M. Flanagan, Peter Moller ...Show all 15 authors... , Silke Bruderlein, Thomas F.E. Barth; Show fewer authors
Preclinical characterization of novel chordoma cell systems and their targeting by pharmocological inhibitors of the CDK4/6 cell-cycle pathway.
Cancer Res. 75:3823-3831(2015)

PubMed=27102572; DOI=10.1002/path.4729; PMCID=PMC4922416
Susanne Scheipl, Michelle Barnard, Lucia Cottone, Mette Jorgensen, David Harold Drewry, William J. Zuercher, Fabrice Turlais, Hong-Tao Ye, Ana P. Leite, James A. Smith, Andreas Leithner, Peter Moller, Silke Bruderlein ...Show all 19 authors... , Naomi Guppy, Fernanda Amary, Roberto Tirabosco, Sandra J. Strauss, Nischalan Pillay, Adrienne M. Flanagan; Show fewer authors
EGFR inhibitors identified as a potential treatment for chordoma in a focused compound screen.
J. Pathol. 239:320-334(2016)

PubMed=28515451; DOI=10.1038/s41598-017-02174-5; PMCID=PMC5435709
Daniela Jager, Thomas F.E. Barth, Silke Bruderlein, Angelika Scheuerle, Beate Rinner, Adrian von Witzleben, Andre Lechel, Patrick Meyer, Regine Mayer-Steinacker, Alexandra von Baer, Markus Schultheiss, Christian R. Wirtz, Peter Moller ...Show all 14 authors... , Kevin Mellert; Show fewer authors
HOXA7, HOXA9, and HOXA10 are differentially expressed in clival and sacral chordomas.
Sci. Rep. 7:2032-2032(2017)

PubMed=28606919; DOI=10.1158/1078-0432.CCR-17-0177; PMCID=PMC5581713
Hua Chen, Cassandra C. Garbutt, Dimitrios Spentzos, Edwin Choy, Francis John Hornicek, Zhen-Feng Duan;
Expression and therapeutic potential of SOX9 in chordoma.
Clin. Cancer Res. 23:5176-5186(2017)

PubMed=28835717; DOI=10.1038/s41598-017-10044-3; PMCID=PMC5569021
Roberta Bosotti, Paola Magnaghi, Sebastiano Di Bella, Liviana Cozzi, Carlo Cusi, Fabio Bozzi, Nicola Beltrami, Giovanni Carapezza, Dario Ballinari, Nadia Amboldi, Rosita Lupi, Alessio Somaschini, Laura Raddrizzani ...Show all 18 authors... , Barbara Salom, Arturo Galvani, Silvia Stacchiotti, Elena Tamborini, Antonella Isacchi; Show fewer authors
Establishment and genomic characterization of the new chordoma cell line Chor-IN-1.
Sci. Rep. 7:9226-9226(2017)

Cross-references
Cell line collections (Providers) ATCC; CRL-3217
DSMZ; ACC-748
Cell line databases/resources cancercelllines; CVCL_4988
DepMap; ACH-002335
DSMZCellDive; ACC-748
Biological sample resources ENCODE; ENCBS267AAA
Chemistry resources GDSC; 1503374
PharmacoDB; UCH1_1626_2019
PubChem_Cell_line; CVCL_4988
Encyclopedic resources Wikidata; Q54973610
Experimental variables resources EFO; EFO_0004389
Gene expression databases GEO; GSM1673845
GEO; GSM1673846
Polymorphism and mutation databases Cosmic; 2663857
Entry history
Entry creation04-Apr-2012
Last entry update10-Apr-2025
Version number35