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Cellosaurus LIM2405 (CVCL_4437)

[Text version]
Cell line name LIM2405
Synonyms LIM 2405; LIM-2405
Accession CVCL_4437
Resource Identification Initiative To cite this cell line use: LIM2405 (RRID:CVCL_4437)
Comments From: Ludwig Institute for Cancer Research, Melbourne Branch; Melbourne; Australia.
Doubling time: 24 hours (PubMed=1427983); 30.72 hours (PubMed=25944804).
Microsatellite instability: Instable (MSI) (PubMed=19378335; PubMed=24755471; PubMed=25926053).
Omics: Deep proteome analysis.
Omics: N-glycan profiling.
Omics: Transcriptome analysis by microarray.
Omics: Transcriptome analysis by RNAseq.
Derived from site: In situ; Colon; UBERON=UBERON_0001155.
Sequence variations
  • Mutation; HGNC; 583; APC; Simple; p.Ala697Val (c.2090C>T); ClinVar=VCV000216153; Zygosity=Unspecified (PubMed=24755471).
  • Mutation; HGNC; 583; APC; Simple; p.Val2194Phefs*5 (c.6579delA); ClinVar=VCV001446272; Zygosity=Unspecified (PubMed=24755471).
  • Mutation; HGNC; 1097; BRAF; Simple; p.Val600Glu (c.1799T>A); ClinVar=VCV000013961; Zygosity=Unspecified (PubMed=19378335; PubMed=24755471).
  • Mutation; HGNC; 9588; PTEN; Simple; p.Val290fs*8 (c.867_868insA); Zygosity=Unspecified (PubMed=24755471).
Disease Cecum adenocarcinoma (NCIt: C5543)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Male
Age at sampling Age unspecified
Category Cancer cell line
STR profile Source(s): CBA=CBA-0165; PubMed=25926053

Markers:
AmelogeninX,Y
CSF1PO14,15
D2S133817,19
D3S135815,16
D5S81812,13
D7S8207,8
D8S117910,12
D13S3178,11
D16S53914,15
D18S5112,18
D19S43313,14.2,15.2
D21S1129,30 (PubMed=25926053)
29,31 (CBA=CBA-0165)
FGA19,21
TH019.3
TPOX8
vWA14,18 (PubMed=25926053)
14,18,19 (CBA=CBA-0165)

Run an STR similarity search on this cell line
Publications

PubMed=1427983; DOI=10.1038/icb.1992.30
Whitehead R.H., Zhang H.H., Hayward I.P.
Retention of tissue-specific phenotype in a panel of colon carcinoma cell lines: relationship to clinical correlates.
Immunol. Cell Biol. 70:227-236(1992)

PubMed=19378335; DOI=10.1002/ijc.24289
Zhang H.-H., Walker F., Kiflemariam S., Whitehead R.H., Williams D., Phillips W.A., Mikeska T., Dobrovic A., Burgess A.W.
Selective inhibition of proliferation in colorectal carcinoma cell lines expressing mutant APC or activated B-Raf.
Int. J. Cancer 125:297-307(2009)

PubMed=23458625; DOI=10.1021/pr3010869
Fanayan S., Smith J.T., Lee L.Y., Yan F.-F., Snyder M.P., Hancock W.S., Nice E.
Proteogenomic analysis of human colon carcinoma cell lines LIM1215, LIM1899, and LIM2405.
J. Proteome Res. 12:1732-1742(2013)

PubMed=24295106; DOI=10.1021/pr400861m
Sethi M.K., Thaysen-Andersen M., Smith J.T., Baker M.S., Packer N.H., Hancock W.S., Fanayan S.
Comparative N-glycan profiling of colorectal cancer cell lines reveals unique bisecting GlcNAc and alpha-2,3-linked sialic acid determinants are associated with membrane proteins of the more metastatic/aggressive cell lines.
J. Proteome Res. 13:277-288(2014)

PubMed=24755471; DOI=10.1158/0008-5472.CAN-14-0013
Mouradov D., Sloggett C., Jorissen R.N., Love C.G., Li S., Burgess A.W., Arango D., Strausberg R.L., Buchanan D., Wormald S., O'Connor L., Wilding J.L., Bicknell D.C., Tomlinson I.P.M., Bodmer W.F., Mariadason J.M., Sieber O.M.
Colorectal cancer cell lines are representative models of the main molecular subtypes of primary cancer.
Cancer Res. 74:3238-3247(2014)

PubMed=25926053; DOI=10.1038/ncomms8002
Medico E., Russo M., Picco G., Cancelliere C., Valtorta E., Corti G., Buscarino M., Isella C., Lamba S., Martinoglio B., Veronese S., Siena S., Sartore-Bianchi A., Beccuti M., Mottolese M., Linnebacher M., Cordero F., Di Nicolantonio F., Bardelli A.
The molecular landscape of colorectal cancer cell lines unveils clinically actionable kinase targets.
Nat. Commun. 6:7002.1-7002.10(2015)

PubMed=25944804; DOI=10.1158/1078-0432.CCR-14-2457
Bazzocco S., Dopeso H., Carton-Garcia F., Macaya I., Andretta E., Chionh F., Rodrigues P., Garrido M., Alazzouzi H., Nieto R., Sanchez A., Schwartz S. Jr., Bilic J., Mariadason J.M., Arango D.
Highly expressed genes in rapidly proliferating tumor cells as new targets for colorectal cancer treatment.
Clin. Cancer Res. 21:3695-3704(2015)

Cross-references
Cell line collections (Providers) CBA; CBA-0165
ECACC; 12062003
Cell line databases/resources cancercelllines; CVCL_4437
ColonAtlas; LIM2405
Biological sample resources BioSample; SAMN07624416
Encyclopedic resources Wikidata; Q54902532
Gene expression databases GEO; GSM1346880
GEO; GSM1448126
GEO; GSM3145717
Polymorphism and mutation databases Cosmic; 1238054
Cosmic; 1482518
Cosmic; 1486137
Cosmic; 1524339
Cosmic; 1676726
Cosmic; 1805261
Cosmic; 2301994
Proteomic databases PRIDE; PXD000120
Entry history
Entry creation04-Apr-2012
Last entry update02-May-2024
Version number29