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Cellosaurus DEOC-1 (CVCL_4161)

[Text version]
Cell line name DEOC-1
Synonyms DEOC1
Accession CVCL_4161
Resource Identification Initiative To cite this cell line use: DEOC-1 (RRID:CVCL_4161)
Comments Population: Japanese.
Doubling time: 81.2 hours (Note=At 6th passage), 100 hours (Note=At 20th passage) (PubMed=17547717).
Karyotypic information: Has lost chromosome Y.
Omics: SNP array analysis.
Omics: Transcriptome analysis by RNAseq.
Derived from site: In situ; Heel, skin; UBERON=UBERON_0015873.
HLA typing Source: PubMed=26589293
Class I
HLA-AA*24:02,26:01
HLA-BB*40:02,52:01
HLA-CC*03:04,12:02
Disease Melanoma (NCIt: C3224)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Male
Age at sampling 59Y
Category Cancer cell line
STR profile Source(s): PubMed=25877200; RCB

Markers:
AmelogeninX
CSF1PO12
D3S135815,17
D5S81811,12
D7S82010
D8S117911
D13S3178,10
D16S53910
D18S5121
D21S1129,32
FGA19,26
Penta D9,11
Penta E12,19
TH019
TPOX11
vWA14,17

Run an STR similarity search on this cell line
Publications

PubMed=17547717; DOI=10.1111/j.1749-0774.2007.00028.x
Maeshima S., Yamada T., Kiyokane K., Mori H.
Establishment and characterization of a cell line (DEOC-1) originating from a human malignant melanoma of the skin.
Hum. Cell 20:23-38(2007)

PubMed=25485619; DOI=10.1038/nbt.3080
Klijn C., Durinck S., Stawiski E.W., Haverty P.M., Jiang Z.-S., Liu H.-B., Degenhardt J., Mayba O., Gnad F., Liu J.-F., Pau G., Reeder J., Cao Y., Mukhyala K., Selvaraj S.K., Yu M.-M., Zynda G.J., Brauer M.J., Wu T.D., Gentleman R.C., Manning G., Yauch R.L., Bourgon R., Stokoe D., Modrusan Z., Neve R.M., de Sauvage F.J., Settleman J., Seshagiri S., Zhang Z.-M.
A comprehensive transcriptional portrait of human cancer cell lines.
Nat. Biotechnol. 33:306-312(2015)

PubMed=25877200; DOI=10.1038/nature14397
Yu M., Selvaraj S.K., Liang-Chu M.M.Y., Aghajani S., Busse M., Yuan J., Lee G., Peale F.V., Klijn C., Bourgon R., Kaminker J.S., Neve R.M.
A resource for cell line authentication, annotation and quality control.
Nature 520:307-311(2015)

PubMed=26589293; DOI=10.1186/s13073-015-0240-5
Scholtalbers J., Boegel S., Bukur T., Byl M., Goerges S., Sorn P., Loewer M., Sahin U., Castle J.C.
TCLP: an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression.
Genome Med. 7:118.1-118.7(2015)

Cross-references
Cell line collections (Providers) RCB; RCB2831
Cell line databases/resources CLO; CLO_0050137
Biological sample resources BioSample; SAMN03472898
Chemistry resources PharmacoDB; DEOC1_287_2019
Encyclopedic resources Wikidata; Q54830977
Experimental variables resources EFO; EFO_0006563
Gene expression databases ArrayExpress; E-MTAB-2706
Polymorphism and mutation databases Cosmic; 874387
Cosmic; 1007159
Sequence databases EGA; EGAS00001000610
Entry history
Entry creation04-Apr-2012
Last entry update05-Oct-2023
Version number19