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Cellosaurus HMY-1 (CVCL_2950)

[Text version]
Cell line name HMY-1
Synonyms HMY1
Accession CVCL_2950
Resource Identification Initiative To cite this cell line use: HMY-1 (RRID:CVCL_2950)
Comments Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE).
Population: Japanese.
Doubling time: 37 hours (PubMed=6239887).
Omics: Genomics; Whole exome sequencing.
Omics: Transcriptomics; RNAseq.
Omics: Variations; SNP array analysis.
Derived from site: Metastatic; Left inguinal lymph node; UBERON=UBERON_0001542.
Sequence variations
  • Mutation; HGNC; HGNC:1097; BRAF; Simple; p.Val600Glu (c.1799T>A); ClinVar=VCV000013961; Zygosity=Unspecified (DepMap=ACH-001522).
HLA typing Source: PubMed=26589293
Class I
HLA-AA*02:06,24:02
HLA-BB*39:01,52:01
HLA-CC*07:02,12:02
Disease Melanoma (NCIt: C3224)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Male
Age at sampling 62Y
Category Cancer cell line
STR profile Source(s): DepMap=ACH-001522; JCRB=JCRB1018; PubMed=25877200

Markers:
AmelogeninX,Y
CSF1PO12
D3S135815
D5S81812
D7S82011,14
D8S117914
D13S31711,13
D16S53910
D18S5114,17
D21S1130,32.2
FGA22
Penta D14
Penta E17,20
TH016
TPOX11
vWA17,19

Run an STR similarity search on this cell line
Publications

PubMed=6239887; DOI=10.1111/j.1346-8138.1984.tb01486.x
Shigeo Kondo, Norio Sato, Kumi Sato, Yutaka Hozumi, Kazuo Aso;
Establishment of cell lines from human malignant melanomas and their application to the assessment of natural killer-like cytotoxicity.
J. Dermatol. 11:328-334(1984)

PubMed=25485619; DOI=10.1038/nbt.3080
Christiaan Klijn, Steffen Durinck, Eric W. Stawiski, Peter M. Haverty, Zhao-Shi Jiang, Han-Bin Liu, Jeremiah Degenhardt, Oleg Mayba, Florian Gnad, Jin-Feng Liu, Gregoire Pau ...Show all 30 authors... , Jens Reeder, Yi Cao, Kiran Mukhyala, Suresh K. Selvaraj, Ma-Mie Yu, Gregory J. Zynda, Matthew J. Brauer, Thomas D. Wu, Robert Clifford Gentleman, Gerard Manning, Robert L. Yauch, Richard Bourgon, David Stokoe, Zora Modrusan, Richard M. Neve, Frederic J. de Sauvage, Jeffrey Settleman, Somasekar Seshagiri, Ze-Min Zhang; Show fewer authors
A comprehensive transcriptional portrait of human cancer cell lines.
Nat. Biotechnol. 33:306-312(2015)

PubMed=25877200; DOI=10.1038/nature14397
Ma-Mie Yu, Suresh K. Selvaraj, May M.Y. Liang-Chu, Sahar Aghajani, Matthew Busse, Jean Yuan, Genee Lee, Franklin V. Peale, Christiaan Klijn, Richard Bourgon, Joshua S. Kaminker, Richard M. Neve;
A resource for cell line authentication, annotation and quality control.
Nature 520:307-311(2015)

PubMed=26589293; DOI=10.1186/s13073-015-0240-5; PMCID=PMC4653878
Jelle Scholtalbers, Sebastian Boegel, Thomas Bukur, Marius Byl, Sebastian Goerges, Patrick Sorn, Martin Loewer, Ugur Sahin, John C. Castle;
TCLP: an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression.
Genome Med. 7:118.1-118.7(2015)

Cross-references
Cell line collections (Providers) CLS; 305145
JCRB; JCRB1018
JCRB; NIHS0252 - Discontinued
Cell line databases/resources cancercelllines; CVCL_2950
Cell_Model_Passport; SIDM01623
DepMap; ACH-001522
Biological sample resources BioSample; SAMN03472869
Chemistry resources PharmacoDB; HMY1_556_2019
Encyclopedic resources Wikidata; Q54889978
Experimental variables resources EFO; EFO_0006582
Gene expression databases ArrayExpress; E-MTAB-2706
Sequence databases EGA; EGAS00001000610
Entry history
Entry creation04-Apr-2012
Last entry update10-Apr-2025
Version number29