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Cellosaurus DM-3 (CVCL_2019)

[Text version]
Cell line name DM-3
Synonyms DM3
Accession CVCL_2019
Resource Identification Initiative To cite this cell line use: DM-3 (RRID:CVCL_2019)
Comments Problematic cell line: May be misclassified. While still annotated as a pleural sarcomatoid mesothelioma cell line, a variety of omics methods are classifying this cell line as a fibroblast (DOI=10.1101/166199; DepMap=ACH-000742).
Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE).
Population: Caucasian.
Doubling time: 54 hours (PubMed=23840376); ~50-60 hours (DSMZ=ACC-595).
Omics: Genomics; Whole exome sequencing.
Omics: Transcriptomics; RNAseq.
Derived from site: In situ; Lung, pleura; UBERON=UBERON_0000977.
Sequence variations
  • Mutation; HGNC; HGNC:6770; SMAD4; Simple; p.Arg496Leu (c.1487G>T); Zygosity=Homozygous (DepMap=ACH-000742).
HLA typing Source: PubMed=26589293
Class I
HLA-AA*02:14,02:14
HLA-BB*13:02,50:01
HLA-CC*06:02,06:02
Genome ancestry Source: PubMed=30894373

Origin% genome
African0
Native American0
East Asian, North0.58
East Asian, South0.68
South Asian2.16
European, North58.64
European, South37.94
Disease Pleural sarcomatoid mesothelioma (NCIt: C45663)
Pleural mesothelioma (ORDO: Orphanet_50251)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Male
Age at sampling 62Y
Category Cancer cell line
STR profile Source(s): DSMZ=ACC-595; PubMed=25877200

Markers:
AmelogeninX,Y
CSF1PO10,11
D2S133817,18
D3S135815,16
D5S81812,13
D7S8208,10
D8S117911,15
D13S31711
D16S5399,13
D18S5112,15
D19S43313,14
D21S1129,30
FGA19,20
Penta D11,12
Penta E7,12
TH016
TPOX8
vWA16,17

Run an STR similarity search on this cell line
Publications

PubMed=15372243; DOI=10.1007/s00418-004-0701-1
Marie-Marthe Philippeaux, Jean-Claude Pache, Sophie Dahoun, Marc Barnet, John-Henri Robert, Jacques Mauel, Anastase Spiliopoulos;
Establishment of permanent cell lines purified from human mesothelioma: morphological aspects, new marker expression and karyotypic analysis.
Histochem. Cell Biol. 122:249-260(2004)

PubMed=23840376; DOI=10.1371/journal.pone.0065903; PMCID=PMC3688685
Adam Szulkin, Gustav Nilsonne, Filip Mundt, Agata M. Wasik, Pega Souri, Anders Hjerpe, Katalin Dobra;
Variation in drug sensitivity of malignant mesothelioma cell lines with substantial effects of selenite and bortezomib, highlights need for individualized therapy.
PLoS ONE 8:e65903.1-e65903.14(2013)

PubMed=25877200; DOI=10.1038/nature14397
Ma-Mie Yu, Suresh K. Selvaraj, May M.Y. Liang-Chu, Sahar Aghajani, Matthew Busse, Jean Yuan, Genee Lee, Franklin V. Peale, Christiaan Klijn, Richard Bourgon, Joshua S. Kaminker, Richard M. Neve;
A resource for cell line authentication, annotation and quality control.
Nature 520:307-311(2015)

PubMed=26589293; DOI=10.1186/s13073-015-0240-5; PMCID=PMC4653878
Jelle Scholtalbers, Sebastian Boegel, Thomas Bukur, Marius Byl, Sebastian Goerges, Patrick Sorn, Martin Loewer, Ugur Sahin, John C. Castle;
TCLP: an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression.
Genome Med. 7:118.1-118.7(2015)

DOI=10.1101/166199
Antoine de Weck, Hans Bitter, Audrey Kauffmann;
Fibroblasts cell lines misclassified as cancer cell lines.
bioRxiv 2017:166199-166199(2017)

PubMed=30894373; DOI=10.1158/0008-5472.CAN-18-2747; PMCID=PMC6445675
Julie Dutil, Zhi-Hua Chen, Alvaro N.A. Monteiro, Jamie K. Teer, Steven A. Eschrich;
An interactive resource to probe genetic diversity and estimated ancestry in cancer cell lines.
Cancer Res. 79:1263-1273(2019)

PubMed=31068700; DOI=10.1038/s41586-019-1186-3; PMCID=PMC6697103
Mahmoud Ghandi, Franklin W. Huang, Judit Jane-Valbuena, Gregory V. Kryukov, Christopher C. Lo, E. Robert McDonald 3rd, Jordi Ginesta Barretina, Ellen T. Gelfand, Craig M. Bielski, Hao-Xin Li, Kevin Hu ...Show all 68 authors... , Alexander Y. Andreev-Drakhlin, Jaegil Kim, Julian M. Hess, Brian J. Haas, Francois Aguet, Barbara A. Weir, Michael V. Rothberg, Brenton R. Paolella, Michael Scott Lawrence, Rehan Akbani, Yi-Ling Lu, Hong L. Tiv, Prafulla C. Gokhale, Antoine de Weck, Ali Amin Mansour, Coyin Oh, Juliann Shih, Kevin Hadi, Yanay Rosen, Jonathan Bistline, Kavitha Venkatesan, Anupama Reddy, Dmitriy Sonkin, Manway Liu, Joseph Lehar, Joshua M. Korn, Dale A. Porter, Michael D. Jones, Javad Golji, Giordano Caponigro, Jordan E. Taylor, Caitlin M. Dunning, Amanda L. Creech, Allison C. Warren, James M. McFarland, Mahdi Zamanighomi, Audrey Kauffmann, Nicolas Stransky, Marcin Imielinski, Yosef E. Maruvka, Andrew D. Cherniack, Aviad Tsherniak, Francisca Vazquez, Jacob D. Jaffe, Andrew Alan Lane, David M. Weinstock, Cory M. Johannessen, Michael P. Morrissey, Frank Stegmeier, Robert Schlegel, William Chun Hahn, Gad Getz, Gordon B. Mills, Jesse S. Boehm, Todd Robert Golub, Levi Alexander Garraway, William Raj Sellers; Show fewer authors
Next-generation characterization of the Cancer Cell Line Encyclopedia.
Nature 569:503-508(2019)

PubMed=33567673; DOI=10.3390/cancers13040685; PMCID=PMC7915464
Maureen Keller, Katarina Reis, Anders Hjerpe, Katalin Dobra, Pontus Aspenstrom;
Cytoskeletal organization correlates to motility and invasiveness of malignant mesothelioma cells.
Cancers (Basel) 13:685.1-685.20(2021)

Cross-references
Cell line collections (Providers) DSMZ; ACC-595
Cell line databases/resources cancercelllines; CVCL_2019
Cell_Model_Passport; SIDM01505
DepMap; ACH-000742
DSMZCellDive; ACC-595
Biological sample resources BioSample; SAMN03473059
BioSample; SAMN10988453
Chemistry resources PharmacoDB; DM3_295_2019
Encyclopedic resources Wikidata; Q54831188
Gene expression databases ArrayExpress; E-MTAB-2770
Polymorphism and mutation databases IARC_TP53; 30031
LiGeA; CCLE_782
Progenetix; CVCL_2019
Entry history
Entry creation04-Apr-2012
Last entry update10-Apr-2025
Version number29