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Cellosaurus KP-N-YS (CVCL_1342)

[Text version]
Cell line name KP-N-YS
Synonyms KPNYS; Kyoto Pediatrics-Neuroblastoma-YS
Accession CVCL_1342
Resource Identification Initiative To cite this cell line use: KP-N-YS (RRID:CVCL_1342)
Comments Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE).
Part of: COSMIC cell lines project.
Population: Japanese.
Microsatellite instability: Stable (MSS) (Sanger).
Omics: Genomics; DNA methylation analysis.
Omics: Genomics; Whole exome sequencing.
Omics: Phenotyping; CRISPR screening.
Omics: Phenotyping; Drug screening.
Omics: Proteomics; Quantitative.
Omics: Transcriptomics; Microarray.
Omics: Variations; SNP array analysis.
Derived from site: Metastatic; Bone marrow; UBERON=UBERON_0002371.
Sequence variations
  • Mutation; HGNC; HGNC:11998; TP53; Simple; p.Cys135Phe (c.404G>T); ClinVar=VCV000376559; Zygosity=Homozygous (Cosmic-CLP=946363).
Genome ancestry Source: PubMed=30894373

Origin% genome
African0
Native American1.29
East Asian, North74.96
East Asian, South23.74
South Asian0
European, North0
European, South0
Disease Adrenal gland neuroblastoma (NCIt: C4827)
Neuroblastoma (ORDO: Orphanet_635)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Hierarchy Children:
CVCL_Y132 (KP-N-YS1n)CVCL_Y133 (KP-N-YS2s)
Sex of cell Male
Age at sampling 4Y
Category Cancer cell line
STR profile Source(s): Cosmic-CLP=946363

Markers:
AmelogeninX,Y
CSF1PO10,11
D5S8189,13
D7S82010,12
D13S3178,12
D16S53910
TH017
TPOX9,11
vWA14

Run an STR similarity search on this cell line
Publications

PubMed=10363161
Masayo Yagi, Tohru Sugimoto, Hiroshi Mine, Yoshihiro Horii, Takafumi Matsumura, Tadashi Sawada, Tatsuo Abe, Kimihiko Sano, Junko Goshi, Katsuhito Takahashi;
Basic calponin expressing human neuroblastoma cell line of KP-N-YS.
Hum. Cell 11:231-238(1998)

PubMed=11129446; DOI=10.1097/00019606-200012000-00007
Tohru Sugimoto, Hiroshi Mine, Yoshihiro Horii, Katsuhito Takahashi, Ryozo Nagai, Ryuichi Morishita, Mihiro Komada, Yujiro Asada, Tadashi Sawada;
Neuroblastoma cell lines showing smooth muscle cell phenotypes.
Diagn. Mol. Pathol. 9:221-228(2000)

PubMed=12702577
Fumiko Saito-Ohara, Issei Imoto, Jun Inoue, Hajime Hosoi, Akira Nakagawara, Tohru Sugimoto, Johji Inazawa;
PPM1D is a potential target for 17q gain in neuroblastoma.
Cancer Res. 63:1876-1883(2003)

PubMed=20164919; DOI=10.1038/nature08768; PMCID=PMC3145113
Graham Robert Bignell, Christopher D. Greenman, Helen R. Davies, Adam P. Butler, Sarah Edkins, Jenny M. Andrews, Gemma Buck, Lina Chen, David Beare, Calli Latimer, Sara Widaa ...Show all 22 authors... , Jonathan Hinton, Ciara Fahey, Bei-Yuan Fu, Sajani Swamy, Gillian L. Dalgliesh, Bin Tean Teh, Panos Deloukas, Feng-Tang Yang, Peter J. Campbell, P. Andrew Futreal, Michael Rudolf Stratton; Show fewer authors
Signatures of mutation and selection in the cancer genome.
Nature 463:893-898(2010)

PubMed=23268333; DOI=10.1016/j.canlet.2012.12.011
Tohru Sugimoto, Takahiro Gotoh, Shigeki Yagyu, Hiroshi Kuroda, Tomoko Iehara, Hajime Hosoi, Sigeru Ohta, Miki Ohira, Akira Nakagawara;
A MYCN-amplified cell line derived from a long-term event-free survivor among our sixteen established neuroblastoma cell lines.
Cancer Lett. 331:115-121(2013)

PubMed=27397505; DOI=10.1016/j.cell.2016.06.017; PMCID=PMC4967469
Francesco Iorio, Theo A. Knijnenburg, Daniel J. Vis, Graham Robert Bignell, Michael Patrick Menden, Michael Schubert, Nanne Aben, Emanuel Goncalves, Syd Barthorpe, Howard Lightfoot, Thomas Cokelaer ...Show all 39 authors... , Patricia Greninger, Ewald van Dyk, Han Chang, Heshani de Silva, Holger Heyn, Xian-Ming Deng, Regina K. Egan, Qing-Song Liu, Tatiana Mironenko, Xeni Mitropoulos, Laura Richardson, Jin-Hua Wang, Ting-Hu Zhang, Sebastian Moran, Sergi Sayols, Maryam Soleimani, David Tamborero, Nuria Lopez-Bigas, Petra Ross-Macdonald, Manel Esteller, Nathanael S. Gray, Daniel Arie Haber, Michael Rudolf Stratton, Cyril Henri Benes, Lodewyk F.A. Wessels, Julio Saez-Rodriguez, Ultan McDermott, Mathew J. Garnett; Show fewer authors
A landscape of pharmacogenomic interactions in cancer.
Cell 166:740-754(2016)

CLPUB00582
Tohru Sugimoto, Hiroshi Kuroda, Shigeki Yagyu, Takahiro Gotoh, Shinya Osone, Shinichi Tamura, Tomoko Iehara, Hajime Hosoi;
Cellular and molecular characteristics of established neuroblastoma cell lines.
J. Cancer Res. Therap. Oncol. 7:201.1-201.15(2019)

PubMed=30894373; DOI=10.1158/0008-5472.CAN-18-2747; PMCID=PMC6445675
Julie Dutil, Zhi-Hua Chen, Alvaro N.A. Monteiro, Jamie K. Teer, Steven A. Eschrich;
An interactive resource to probe genetic diversity and estimated ancestry in cancer cell lines.
Cancer Res. 79:1263-1273(2019)

PubMed=30971826; DOI=10.1038/s41586-019-1103-9
Fiona M. Behan, Francesco Iorio, Gabriele Picco, Emanuel Goncalves, Charlotte M. Beaver, Giorgia Migliardi, Rita Santos, Yanhua Rao, Francesco Sassi, Marika Pinnelli, Rizwan Ansari ...Show all 25 authors... , Sarah Harper, David Adam Jackson, Rebecca McRae, Rachel Pooley, Piers Wilkinson, Dieudonne J. van der Meer, David Dow, Carolyn A. Buser-Doepner, Andrea Bertotti, Livio Trusolino, Euan Alexander Stronach, Julio Saez-Rodriguez, Kosuke Yusa, Mathew J. Garnett; Show fewer authors
Prioritization of cancer therapeutic targets using CRISPR-Cas9 screens.
Nature 568:511-516(2019)

PubMed=35839778; DOI=10.1016/j.ccell.2022.06.010; PMCID=PMC9387775
Emanuel Goncalves, Rebecca C. Poulos, Zhao-Xiang Cai, Syd Barthorpe, Srikanth S. Manda, Natasha Lucas, Alexandra Beck, Daniel Bucio-Noble, Michael Dausmann, Caitlin Hall, Michael Hecker ...Show all 32 authors... , Jennifer Koh, Howard Lightfoot, Sadia Mahboob, Iman Mali, James Morris, Laura Richardson, Akila J. Seneviratne, Rebecca Shepherd, Erin Sykes, Frances Thomas, Sara Valentini, Steven G. Williams, Yang-Xiu Wu, Dylan Xavier, Karen L. MacKenzie, Peter G. Hains, Brett Tully, Phillip James Robinson, Qing Zhong, Mathew J. Garnett, Roger Robert Reddel; Show fewer authors
Pan-cancer proteomic map of 949 human cell lines.
Cancer Cell 40:835-849.e8(2022)

Cross-references
Cell line databases/resources CLO; CLO_0037080
cancercelllines; CVCL_1342
Cell_Model_Passport; SIDM00157
CGH-DB; 82-1
CGH-DB; 9083-4
Cosmic-CLP; 946363
DepMap; ACH-002261
LINCS_LDP; LCL-1986
CRISP screens repositories BioGRID_ORCS_Cell_line; 916
Chemistry resources ChEMBL-Cells; CHEMBL3308266
ChEMBL-Targets; CHEMBL2366065
GDSC; 946363
PharmacoDB; KPNYS_789_2019
PubChem_Cell_line; CVCL_1342
Encyclopedic resources Wikidata; Q54900406
Gene expression databases ArrayExpress; E-MTAB-783
GEO; GSM1670008
Polymorphism and mutation databases Cosmic; 946363
IARC_TP53; 27174
Proteomic databases PRIDE; PXD030304
Entry history
Entry creation04-Apr-2012
Last entry update10-Apr-2025
Version number38