Cellosaurus cell line GM12046 (CVCL_0V42)

Cellosaurus GM12046 (CVCL_0V42)

Cell line name

GM12046

Synonyms

CEPH-1346-NA12046; 1346-8366

Accession

CVCL_0V42

Secondary accession

CVCL_G459

Resource Identification Initiative

To cite this cell line use: GM12046 (RRID:CVCL_0V42)

Comments

Part of: CEPH/Utah pedigree cell line collection.
Part of: International Genome Sample Resource (1000 genomes project) cell lines.
Part of: International Histocompatibility Workshop cell lines.
Registration: CEPH Families Reference Panel; 134614.
Population: Caucasian; Utah residents with ancestry from Northern and Western Europe.
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: Genomics; Whole genome sequencing.
Omics: Transcriptomics; CAGE-seq.
Omics: Transcriptomics; Microarray.
Omics: Variations; CNV analysis.
Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178.
Cell type: B-cell; CL=CL_0000236.

HLA typing

Source: IPD-IMGT/HLA=25887

Class I
HLA-A	A*01:01,02:05
HLA-B	B*50:01,57:01
HLA-C	C*06:02,06:02
Class II
HLA-DP	DPA1*01:03,02:01:01
	DPB1*03:01:01,11:01
HLA-DQ	DQA1*02:01,05:01
	DQB1*02:01,02:01
HLA-DR	DRB1*03:01,07:01
	DRB3*01
	DRB4*01

Species of origin

Homo sapiens (Human) (NCBI Taxonomy: 9606)

Sex of cell

Female

Age at sampling

Age unspecified

Category

Transformed cell line

Web pages

Info; CEPH; -; https://www.cephb.fr/en/familles_CEPH.php

Publications

PubMed=19797678; DOI=10.1101/gr.097600.109; PMCID=PMC2775589
Renuka R. Nayak, Michael Justin Kearns, Richard Saul Spielman, Vivian G. Cheung;
Coexpression network based on natural variation in human gene expression reveals gene interactions and functions.
Genome Res. 19:1953-1962(2009)

PubMed=20856902; DOI=10.1371/journal.pbio.1000480; PMCID=PMC2939022
Vivian G. Cheung, Renuka R. Nayak, Isabel Xiao-Rong Wang, Susannah Elwyn, Sarah M. Cousins, Michael Morley, Richard Saul Spielman;
Polymorphic cis- and trans-regulation of human gene expression.
PLoS Biol. 8:e1000480.1-e1000480.14(2010)

PubMed=29116076; DOI=10.1038/s41467-017-01467-7; PMCID=PMC5677018
Marco Garieri, Olivier Delaneau, Federico Andrea Santoni, Richard J. Fish, David Mull, Piero Carninci, Emmanouil Theophilos Dermitzakis, Stylianos E. Antonarakis, Alexandre Fort;
The effect of genetic variation on promoter usage and enhancer activity.
Nat. Commun. 8:1358.1-1358.9(2017)

Cross-references

Cell line collections (Providers)

Coriell; GM12046

Cell line databases/resources

CLO; CLO_0020423
dbMHC; 48623
IHW; IHW01089
IPD-IMGT/HLA; 25887

Biological sample resources

BioSample; SAMN00801105
IGSR; NA12046

Encyclopedic resources

Wikidata; Q54845481

Gene expression databases

ArrayExpress; E-MTAB-5835
GEO; GSM25546
GEO; GSM25547
GEO; GSM314908
GEO; GSM314909
GEO; GSM420756
GEO; GSM420757
GEO; GSM1719780

Entry history

Entry creation

08-Jul-2015

Last entry update

10-Apr-2025

Version number

21