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Cellosaurus CCS292 (CVCL_0J30)

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Cell line name CCS292
Accession CVCL_0J30
Resource Identification Initiative To cite this cell line use: CCS292 (RRID:CVCL_0J30)
Comments Omics: Genomics; Whole exome sequencing.
Omics: Transcriptomics; RNAseq.
Sequence variations
  • Gene fusion; HGNC; HGNC:783; ATF1 + HGNC; HGNC:3508; EWSR1; Name(s)=EWSR1-ATF1, EWS-ATF; Note=Type 1: EWSR1 exon 8 fused to ATF1 exon 4 (PubMed=16766266).
Disease Clear cell sarcoma of soft tissue (NCIt: C3745)
Soft tissue sarcoma (ORDO: Orphanet_3394)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Sex unspecified
Age at sampling Age unspecified
Category Cancer cell line
STR profile Source(s): PubMed=36959380

Markers:
AmelogeninX
CSF1PO12,13
D3S135815
D5S81810,12
D7S8209
D8S117913,16
D13S31712,13
D16S53911
D18S5114,15
D21S1129,30.2
Penta D12
Penta E11,16
TH017,9.3
TPOX8,12
vWA16,17

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Publications

PubMed=16766266; DOI=10.1016/j.ccr.2006.04.021
Ian J. Davis, Jessica J. Kim, Fatih Ozsolak, Hans R. Widlund, Orit Rozenblatt-Rosen, Scott R. Granter, Jin-Yan Du, Jonathan A. Fletcher, Christopher T. Denny, Stephen Lee Lessnick, William Marston Linehan ...Show all 13 authors... , Andrew Li-Jen Kung, David Erich Fisher; Show fewer authors
Oncogenic MITF dysregulation in clear cell sarcoma: defining the MiT family of human cancers.
Cancer Cell 9:473-484(2006)

PubMed=36959380; DOI=10.1038/s41416-023-02222-0; PMCID=PMC10147623
Samuel V. Rasmussen, Agnieszka Wozniak, Melvin Lathara, Joshua M. Goldenberg, Benjamin Michael Samudio, Lissett Ramirez Bickford, Kiyo Nagamori, Hollis Wright, Andrew D. Woods, Shefali Chauhan, Che-Jui Lee ...Show all 30 authors... , Erin R. Rudzinski, Michael K. Swift, Tadashi Kondo, David Erich Fisher, Evgeny N. Imyanitov, Isidro Machado, Antonio Llombart-Bosch, Irene L. Andrulis, Nalan Gokgoz, Jay Steven Wunder, Hiroshi Moritake, Takuro Nakamura, Ganapati Srinivasa, Khin Thway, Robin L. Jones, Paul H. Huang, Noah E. Berlow, Patrick Schoffski, Charles Keller; Show fewer authors
Functional genomics of human clear cell sarcoma: genomic, transcriptomic and chemical biology landscape for clear cell sarcoma.
Br. J. Cancer 128:1941-1954(2023)

Cross-references
Encyclopedic resources Wikidata; Q54809057
Sequence databases EGA; EGAD00001008611
Entry history
Entry creation10-Apr-2015
Last entry update10-Apr-2025
Version number7