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Cellosaurus WM35 (CVCL_0580)

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Cell line name WM35
Synonyms WM-35; WM 35; WC00060
Accession CVCL_0580
Resource Identification Initiative To cite this cell line use: WM35 (RRID:CVCL_0580)
Comments Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE).
Part of: COSMIC cell lines project.
Part of: Wistar Institute melanoma cell line collection.
Population: Caucasian.
Microsatellite instability: Stable (MSS) (Sanger).
Omics: Genomics; DNA methylation analysis.
Omics: Genomics; Whole exome sequencing.
Omics: Phenotyping; Drug screening.
Omics: Proteomics; Quantitative.
Omics: Transcriptomics; Microarray.
Caution: The reported STR profile from Wistar of this cell line was changed at one point between February 2016 when we retrieved them and entered them in Cellosaurus and May 2018. The major changes were: D18S51: 20->14,15 and FGA: 19->19,24.
Derived from site: In situ; Skin; UBERON=UBERON_0002097.
Sequence variations
  • Mutation; HGNC; HGNC:1097; BRAF; Simple; p.Val600Glu (c.1799T>A); ClinVar=VCV000013961; Zygosity=Heterozygous (PubMed=18632627; Cosmic-CLP=1299080; DepMap=ACH-002207; Wistar).
Genome ancestry Source: PubMed=30894373

Origin% genome
African0
Native American0
East Asian, North0.26
East Asian, South0.38
South Asian0.25
European, North72.7
European, South26.42
Disease Cutaneous melanoma (NCIt: C3510)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Hierarchy Children:
CVCL_A806 (WM35-P1N1)CVCL_A807 (WM35-P1N2)CVCL_A808 (WM35-P1N3)
CVCL_A809 (WM35-P2N1)CVCL_A810 (WM35-P2N2)CVCL_A811 (WM35-P2N3)
Sex of cell Female
Age at sampling 24Y
Category Cancer cell line
STR profile Source(s): ATCC=CRL-2807; Cosmic-CLP=1299080; PubMed=27087056; Wistar

Markers:
AmelogeninX
CSF1PO10
D2S133818,25
D3S135816,18
D5S81811,12
D7S82010,13
D8S117911,13
D13S31711
D16S53912,13
D18S5114,15
D19S43315,16
D21S1129,32.2
FGA19,24
TH019.3
TPOX8
vWA17

Run an STR similarity search on this cell line
Web pages Info; Wistar; -; https://web.archive.org/web/20141129125241/http://www.wistar.org:80/lab/meenhard-herlyn-dvm-dsc/page/melanoma-cell-lines-0
Publications

PubMed=2253310; DOI=10.1007/BF00046337
Meenhard Herlyn;
Human melanoma: development and progression.
Cancer Metastasis Rev. 9:101-112(1990)

PubMed=2068080; DOI=10.1073/pnas.88.14.6028; PMCID=PMC52015
Isabelle Cornil, Dan Theodorescu, Shan Man, Meenhard Herlyn, Jadranka Adriana Jambrosic, Robert S. Kerbel;
Fibroblast cell interactions with human melanoma cells affect tumor cell growth as a function of tumor progression.
Proc. Natl. Acad. Sci. U.S.A. 88:6028-6032(1991)

PubMed=8160777; PMCID=PMC1887247
Hiroaki Kobayashi, Shan Man, John R. MacDougall, Charles H. Graham, Chao Lu, Robert S. Kerbel;
Variant sublines of early-stage human melanomas selected for tumorigenicity in nude mice express a multicytokine-resistant phenotype.
Am. J. Pathol. 144:776-786(1994)

PubMed=11123321; DOI=10.4049/jimmunol.166.1.432
Jian Li, Sarita Pereira, Patricia Van Belle, Ping Tsui, David E. Elder, David W. Speicher, Keith Deen, Alban J. Linnenbach, Rajasekharan Somasundaram, Rolf K. Swoboda, Dorothee Herlyn;
Isolation of the melanoma-associated antigen p23 using antibody phage display.
J. Immunol. 166:432-438(2001)

PubMed=16827748; DOI=10.1111/j.1600-0749.2006.00322.x
Keith S. Hoek, Natalie C. Schlegel, Patricia Brafford, Antje Sucker, Selma Ugurel, Rajiv Kumar, Barbara L. Weber, Katherine L. Nathanson, Donald J. Phillips, Meenhard Herlyn, Dirk Schadendorf, Reinhard Dummer;
Metastatic potential of melanomas defined by specific gene expression profiles with no BRAF signature.
Pigment Cell Res. 19:290-302(2006)

PubMed=18632627; DOI=10.1158/0008-5472.CAN-08-0235; PMCID=PMC2615688
Keiran S.M. Smalley, Rooha Contractor, Thiennga K. Nguyen, Min Xiao, Robin Edwards, Viswanathan Muthusamy, Alastair J. King, Keith Thomas Flaherty, Marcus W. Bosenberg, Meenhard Herlyn, Katherine L. Nathanson;
Identification of a novel subgroup of melanomas with KIT/cyclin-dependent kinase-4 overexpression.
Cancer Res. 68:5743-5752(2008)

PubMed=18790768; DOI=10.1158/1535-7163.MCT-08-0431; PMCID=PMC2651569
Keiran S.M. Smalley, Mercedes Lioni, Maurizia Dalla Palma, Min Xiao, Brijal Desai, Suzanne Egyhazi Brage, Johan Hansson, Hong Wu, Alastair J. King, Patricia Van Belle, David E. Elder ...Show all 14 authors... , Keith Thomas Flaherty, Meenhard Herlyn, Katherine L. Nathanson; Show fewer authors
Increased cyclin D1 expression can mediate BRAF inhibitor resistance in BRAF V600E-mutated melanomas.
Mol. Cancer Ther. 7:2876-2883(2008)

PubMed=23039341; DOI=10.1186/1476-4598-11-75; PMCID=PMC3554420
Sara A. Byron, David C. Loch, Candice L. Wellens, Andreas Wortmann, Jia-Yi Wu, John Wang, Kenichi Nomoto, Pamela M. Pollock;
Sensitivity to the MEK inhibitor E6201 in melanoma cells is associated with mutant BRAF and wildtype PTEN status.
Mol. Cancer 11:75.1-75.15(2012)

PubMed=27087056; DOI=10.1038/srep24569; PMCID=PMC4834532
Parvathi Haridas, Jacqui A. McGovern, Abhishek S. Kashyap, Donald Leon Sean McElwain, Matthew J. Simpson;
Standard melanoma-associated markers do not identify the MM127 metastatic melanoma cell line.
Sci. Rep. 6:24569.1-24569.6(2016)

PubMed=27397505; DOI=10.1016/j.cell.2016.06.017; PMCID=PMC4967469
Francesco Iorio, Theo A. Knijnenburg, Daniel J. Vis, Graham Robert Bignell, Michael Patrick Menden, Michael Schubert, Nanne Aben, Emanuel Goncalves, Syd Barthorpe, Howard Lightfoot, Thomas Cokelaer ...Show all 39 authors... , Patricia Greninger, Ewald van Dyk, Han Chang, Heshani de Silva, Holger Heyn, Xian-Ming Deng, Regina K. Egan, Qing-Song Liu, Tatiana Mironenko, Xeni Mitropoulos, Laura Richardson, Jin-Hua Wang, Ting-Hu Zhang, Sebastian Moran, Sergi Sayols, Maryam Soleimani, David Tamborero, Nuria Lopez-Bigas, Petra Ross-Macdonald, Manel Esteller, Nathanael S. Gray, Daniel Arie Haber, Michael Rudolf Stratton, Cyril Henri Benes, Lodewyk F.A. Wessels, Julio Saez-Rodriguez, Ultan McDermott, Mathew J. Garnett; Show fewer authors
A landscape of pharmacogenomic interactions in cancer.
Cell 166:740-754(2016)

PubMed=30894373; DOI=10.1158/0008-5472.CAN-18-2747; PMCID=PMC6445675
Julie Dutil, Zhi-Hua Chen, Alvaro N.A. Monteiro, Jamie K. Teer, Steven A. Eschrich;
An interactive resource to probe genetic diversity and estimated ancestry in cancer cell lines.
Cancer Res. 79:1263-1273(2019)

PubMed=35839778; DOI=10.1016/j.ccell.2022.06.010; PMCID=PMC9387775
Emanuel Goncalves, Rebecca C. Poulos, Zhao-Xiang Cai, Syd Barthorpe, Srikanth S. Manda, Natasha Lucas, Alexandra Beck, Daniel Bucio-Noble, Michael Dausmann, Caitlin Hall, Michael Hecker ...Show all 32 authors... , Jennifer Koh, Howard Lightfoot, Sadia Mahboob, Iman Mali, James Morris, Laura Richardson, Akila J. Seneviratne, Rebecca Shepherd, Erin Sykes, Frances Thomas, Sara Valentini, Steven G. Williams, Yang-Xiu Wu, Dylan Xavier, Karen L. MacKenzie, Peter G. Hains, Brett Tully, Phillip James Robinson, Qing Zhong, Mathew J. Garnett, Roger Robert Reddel; Show fewer authors
Pan-cancer proteomic map of 949 human cell lines.
Cancer Cell 40:835-849.e8(2022)

Cross-references
Cell line collections (Providers) ATCC; CRL-2807 - Discontinued
Coriell; WC00060 - Discontinued
Cell line databases/resources CLO; CLO_0009617
MCCL; MCC:0000486
cancercelllines; CVCL_0580
Cell_Model_Passport; SIDM00974
Cosmic-CLP; 1299080
DepMap; ACH-002207
LINCS_LDP; LCL-1263
Lonza; 583
Anatomy/cell type resources BTO; BTO_0003475
Biological sample resources BioSample; SAMN03471793
Chemistry resources GDSC; 1299080
PharmacoDB; WM35_1672_2019
Encyclopedic resources Wikidata; Q54994256
Experimental variables resources EFO; EFO_0022558
Gene expression databases ArrayExpress; E-MTAB-3610
GEO; GSM109040
GEO; GSM186484
GEO; GSM186485
GEO; GSM188068
GEO; GSM188120
GEO; GSM188193
GEO; GSM188208
GEO; GSM188213
GEO; GSM188284
GEO; GSM188293
GEO; GSM555119
GEO; GSM555188
GEO; GSM952586
GEO; GSM1670580
Polymorphism and mutation databases Cosmic; 686396
Cosmic; 886834
Cosmic; 1155548
Cosmic; 1187584
Cosmic; 1247866
Cosmic; 1303075
Cosmic; 1507600
Cosmic; 1995666
Cosmic; 2159431
Progenetix; CVCL_0580
Proteomic databases PRIDE; PXD030304
Sequence databases EGA; EGAS00001000978
Entry history
Entry creation04-Apr-2012
Last entry update14-Aug-2025
Version number37