Cellosaurus logo
expasy logo

Cellosaurus SNU-638 (CVCL_0102)

[Text version]
Cell line name SNU-638
Synonyms SNU638
Accession CVCL_0102
Resource Identification Initiative To cite this cell line use: SNU-638 (RRID:CVCL_0102)
Comments Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE).
Part of: Seoul National University (SNU) cell line collection.
Population: Korean.
Doubling time: 25 hours (PubMed=29435981).
Omics: Genomics; Whole exome sequencing.
Omics: Transcriptomics; Microarray.
Omics: Transcriptomics; RNAseq.
Omics: Variations; SNP array analysis.
Derived from site: Metastatic; Ascites; UBERON=UBERON_0007795.
Sequence variations
HLA typing Source: PubMed=25960936
Class I
HLA-AA*03:19,24:02
HLA-BB*44:02,52:01
HLA-CC*05:01,12:02
Class II
HLA-DQDQB1*06:02,06:02
HLA-DRDRB1*15:01,15:01

Source: PubMed=26589293
Class I
HLA-AA*03:19,24:02
HLA-BB*44:02,52:01
HLA-CC*05:01,12:02
Disease Gastric adenocarcinoma (NCIt: C4004)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Hierarchy Children:
CVCL_C9BY (638-F1)CVCL_C9BZ (638-F2)CVCL_L047 (SNU-638-5FU)
CVCL_L048 (SNU-638-CIS)
Sex of cell Male
Age at sampling 48Y
Category Cancer cell line
STR profile Source(s): DepMap=ACH-001664; KCLB=00638; PubMed=25877200

Markers:
AmelogeninX
CSF1PO10,12
D3S135815
D5S81810,13,14,15 (PubMed=25877200)
10,13,14,15,16 (DepMap=ACH-001664)
10,14 (KCLB=00638)
D7S8209,10
D8S117911,13
D13S31710
D16S53911,13 (KCLB=00638; PubMed=25877200)
11,13,14 (DepMap=ACH-001664)
D18S5114,16
D21S1130.2,31
FGA17,26,27 (DepMap=ACH-001664)
17,27 (PubMed=25877200)
Penta D9
Penta E14,18
TH017
TPOX8,11
vWA14,19

Run an STR similarity search on this cell line
Publications

PubMed=9033653; DOI=10.1002/(SICI)1097-0215(19970207)70:4<443::AID-IJC12>3.0.CO;2-G
Jae-Gahb Park, Han-Kwang Yang, Woo-Ho Kim, June-Key Chung, Myung-Soo Kang, Jae-Ho Lee, Jae Hwan Oh, Hyun-Sook Park, Kyong-Sook Yeo, Shin Hyuck Kang, Sang-Yong Song ...Show all 15 authors... , Yun Kyung Kang, Yung-Jue Bang, Yong Il Kim, Jin-Pok Kim; Show fewer authors
Establishment and characterization of human gastric carcinoma cell lines.
Int. J. Cancer 70:443-449(1997)

PubMed=10812166; DOI=10.1016/S0165-4608(99)00217-4
Yong-Hyuck Chun, Joon-Il Kil, Young-Suk Suh, Seung-Han Kim, Hyun Kim, Sun-Hwa Park;
Characterization of chromosomal aberrations in human gastric carcinoma cell lines using chromosome painting.
Cancer Genet. Cytogenet. 119:18-25(2000)

PubMed=10974411; DOI=10.1016/S0304-3835(00)00535-8
Young Min Chung, Sun-Hee Park, Jong Kuk Park, Yoon-Taik Kim, Yoon-Koo Kang, Young Do Yoo;
Establishment and characterization of 5-fluorouracil-resistant gastric cancer cells.
Cancer Lett. 159:95-101(2000)

PubMed=15723654; DOI=10.1111/j.1349-7006.2005.00016.x; PMCID=PMC11160020
Hisashi Takada, Issei Imoto, Hitoshi Tsuda, Itaru Sonoda, Takashi Ichikura, Hidetaka Mochizuki, Takeshi Okanoue, Johji Inazawa;
Screening of DNA copy-number aberrations in gastric cancer cell lines by array-based comparative genomic hybridization.
Cancer Sci. 96:100-110(2005)

PubMed=19956504; DOI=10.4143/crt.2005.37.1.1; PMCID=PMC2785416
Ja-Lok Ku, Jae-Gahb Park;
Biology of SNU cell lines.
Cancer Res. Treat. 37:1-19(2005)

PubMed=24807215; DOI=10.1038/ncomms4830; PMCID=PMC4024760
Jin-Feng Liu, Mark L. McCleland, Eric W. Stawiski, Florian Gnad, Oleg Mayba, Peter M. Haverty, Steffen Durinck, Ying-Jiun Chen, Christiaan Klijn, Suchit Jhunjhunwala, Michael Lawrence ...Show all 30 authors... , Han-Bin Liu, Yi-Nan Wan, Vivek S. Chopra, Murat Burat Yaylaoglu, Wen-Lin Yuan, Connie Ha, Houston N. Gilbert, Jens Reeder, Gregoire Pau, Jeremy Stinson, Howard M. Stern, Gerard Manning, Thomas D. Wu, Richard M. Neve, Frederic J. de Sauvage, Zora Modrusan, Somasekar Seshagiri, Ron Firestein, Ze-Min Zhang; Show fewer authors
Integrated exome and transcriptome sequencing reveals ZAK isoform usage in gastric cancer.
Nat. Commun. 5:3830.1-3830.8(2014)

PubMed=25960936; DOI=10.4161/21624011.2014.954893; PMCID=PMC4355981
Sebastian Boegel, Martin Lower, Thomas Bukur, Ugur Sahin, John C. Castle;
A catalog of HLA type, HLA expression, and neo-epitope candidates in human cancer cell lines.
OncoImmunology 3:e954893.1-e954893.12(2014)

PubMed=25485619; DOI=10.1038/nbt.3080
Christiaan Klijn, Steffen Durinck, Eric W. Stawiski, Peter M. Haverty, Zhao-Shi Jiang, Han-Bin Liu, Jeremiah Degenhardt, Oleg Mayba, Florian Gnad, Jin-Feng Liu, Gregoire Pau ...Show all 30 authors... , Jens Reeder, Yi Cao, Kiran Mukhyala, Suresh K. Selvaraj, Ma-Mie Yu, Gregory J. Zynda, Matthew J. Brauer, Thomas D. Wu, Robert Clifford Gentleman, Gerard Manning, Robert L. Yauch, Richard Bourgon, David Stokoe, Zora Modrusan, Richard M. Neve, Frederic J. de Sauvage, Jeffrey Settleman, Somasekar Seshagiri, Ze-Min Zhang; Show fewer authors
A comprehensive transcriptional portrait of human cancer cell lines.
Nat. Biotechnol. 33:306-312(2015)

PubMed=25877200; DOI=10.1038/nature14397
Ma-Mie Yu, Suresh K. Selvaraj, May M.Y. Liang-Chu, Sahar Aghajani, Matthew Busse, Jean Yuan, Genee Lee, Franklin V. Peale, Christiaan Klijn, Richard Bourgon, Joshua S. Kaminker, Richard M. Neve;
A resource for cell line authentication, annotation and quality control.
Nature 520:307-311(2015)

PubMed=26589293; DOI=10.1186/s13073-015-0240-5; PMCID=PMC4653878
Jelle Scholtalbers, Sebastian Boegel, Thomas Bukur, Marius Byl, Sebastian Goerges, Patrick Sorn, Martin Loewer, Ugur Sahin, John C. Castle;
TCLP: an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression.
Genome Med. 7:118.1-118.7(2015)

PubMed=29435981; DOI=10.1002/ijc.31304
Hyun Jeong Kim, Sun Kyoung Kang, Woo Sun Kwon, Tae Soo Kim, Inhye Jeong, Hei-Cheul Jeung, Michael Kragh, Ivan D. Horak, Hyun Cheol Chung, Sun Young Rha;
Forty-nine gastric cancer cell lines with integrative genomic profiling for development of c-MET inhibitor.
Int. J. Cancer 143:151-159(2018)

Cross-references
Cell line collections (Providers) KCLB; 00638
Cell line databases/resources cancercelllines; CVCL_0102
Cell_Model_Passport; SIDM01769
CGH-DB; 127-1
CGH-DB; 9015-4
DepMap; ACH-001664
Anatomy/cell type resources BTO; BTO_0003478
Biological sample resources BioSample; SAMN03473180
Chemistry resources ChEMBL-Cells; CHEMBL3307747
ChEMBL-Targets; CHEMBL614935
PharmacoDB; SNU638_1476_2019
PubChem_Cell_line; CVCL_0102
Encyclopedic resources Wikidata; Q54955236
Experimental variables resources EFO; EFO_0006758
Gene expression databases ArrayExpress; E-MTAB-2706
GEO; GSM1374896
Polymorphism and mutation databases Cosmic; 685583
Cosmic; 848143
Cosmic; 869511
Cosmic; 921601
Cosmic; 1067207
Cosmic; 1090457
Cosmic; 1294961
Cosmic; 1528878
Cosmic; 2036662
Cosmic; 2373753
Cosmic; 2484959
Cosmic; 2646587
Cosmic; 2807650
IARC_TP53; 7421
Sequence databases EGA; EGAS00001000610
Entry history
Entry creation04-Apr-2012
Last entry update10-Apr-2025
Version number37