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Cellosaurus SNU-484 (CVCL_0100)

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Cell line name SNU-484
Synonyms SNU484
Accession CVCL_0100
Resource Identification Initiative To cite this cell line use: SNU-484 (RRID:CVCL_0100)
Comments Part of: Seoul National University (SNU) cell line collection.
Population: Korean.
Doubling time: 34 hours (PubMed=29435981).
Omics: Genomics; Whole exome sequencing.
Omics: Transcriptomics; Microarray.
Omics: Transcriptomics; RNAseq.
Omics: Variations; SNP array analysis.
Derived from site: In situ; Stomach; UBERON=UBERON_0000945.
Sequence variations
HLA typing Source: PubMed=25960936
Class I
HLA-AA*24:02,24:02
HLA-BB*44:05,51:01
HLA-CC*05:01,14:02
Class II
HLA-DQDQB1*04:01,04:01

Source: PubMed=26589293
Class I
HLA-AA*24:02,30:01
HLA-BB*44:02,51:01
HLA-CC*05:01,14:02
Disease Gastric adenocarcinoma (NCIt: C4004)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Hierarchy Children:
CVCL_C1NA (SNU-484 Ola-R)
Sex of cell Male
Age at sampling 53Y
Category Cancer cell line
STR profile Source(s): KCLB=00484; PubMed=25877200

Markers:
AmelogeninX
CSF1PO9
D3S135818
D5S81810
D7S82012
D8S117914
D13S31711,12
D16S53913
D18S5113,15
D21S1130
FGA19,23
Penta D12
Penta E22
TH017
TPOX8
vWA18

Run an STR similarity search on this cell line
Publications

PubMed=9033653; DOI=10.1002/(SICI)1097-0215(19970207)70:4<443::AID-IJC12>3.0.CO;2-G
Jae-Gahb Park, Han-Kwang Yang, Woo-Ho Kim, June-Key Chung, Myung-Soo Kang, Jae-Ho Lee, Jae Hwan Oh, Hyun-Sook Park, Kyong-Sook Yeo, Shin Hyuck Kang, Sang-Yong Song ...Show all 15 authors... , Yun Kyung Kang, Yung-Jue Bang, Yong Il Kim, Jin-Pok Kim; Show fewer authors
Establishment and characterization of human gastric carcinoma cell lines.
Int. J. Cancer 70:443-449(1997)

PubMed=10812166; DOI=10.1016/S0165-4608(99)00217-4
Yong-Hyuck Chun, Joon-Il Kil, Young-Suk Suh, Seung-Han Kim, Hyun Kim, Sun-Hwa Park;
Characterization of chromosomal aberrations in human gastric carcinoma cell lines using chromosome painting.
Cancer Genet. Cytogenet. 119:18-25(2000)

PubMed=15723654; DOI=10.1111/j.1349-7006.2005.00016.x; PMCID=PMC11160020
Hisashi Takada, Issei Imoto, Hitoshi Tsuda, Itaru Sonoda, Takashi Ichikura, Hidetaka Mochizuki, Takeshi Okanoue, Johji Inazawa;
Screening of DNA copy-number aberrations in gastric cancer cell lines by array-based comparative genomic hybridization.
Cancer Sci. 96:100-110(2005)

PubMed=19956504; DOI=10.4143/crt.2005.37.1.1; PMCID=PMC2785416
Ja-Lok Ku, Jae-Gahb Park;
Biology of SNU cell lines.
Cancer Res. Treat. 37:1-19(2005)

PubMed=18804159; DOI=10.1016/j.ygeno.2008.08.002
Jae-Joon Jung, Hei-Cheul Jeung, Hyun Cheol Chung, Jung Ok Lee, Tae Soo Kim, Yong Tai Kim, Sung Hoon Noh, Sun Young Rha;
In vitro pharmacogenomic database and chemosensitivity predictive genes in gastric cancer.
Genomics 93:52-61(2009)

PubMed=24807215; DOI=10.1038/ncomms4830; PMCID=PMC4024760
Jin-Feng Liu, Mark L. McCleland, Eric W. Stawiski, Florian Gnad, Oleg Mayba, Peter M. Haverty, Steffen Durinck, Ying-Jiun Chen, Christiaan Klijn, Suchit Jhunjhunwala, Michael Lawrence ...Show all 30 authors... , Han-Bin Liu, Yi-Nan Wan, Vivek S. Chopra, Murat Burat Yaylaoglu, Wen-Lin Yuan, Connie Ha, Houston N. Gilbert, Jens Reeder, Gregoire Pau, Jeremy Stinson, Howard M. Stern, Gerard Manning, Thomas D. Wu, Richard M. Neve, Frederic J. de Sauvage, Zora Modrusan, Somasekar Seshagiri, Ron Firestein, Ze-Min Zhang; Show fewer authors
Integrated exome and transcriptome sequencing reveals ZAK isoform usage in gastric cancer.
Nat. Commun. 5:3830.1-3830.8(2014)

PubMed=25960936; DOI=10.4161/21624011.2014.954893; PMCID=PMC4355981
Sebastian Boegel, Martin Lower, Thomas Bukur, Ugur Sahin, John C. Castle;
A catalog of HLA type, HLA expression, and neo-epitope candidates in human cancer cell lines.
OncoImmunology 3:e954893.1-e954893.12(2014)

PubMed=25485619; DOI=10.1038/nbt.3080
Christiaan Klijn, Steffen Durinck, Eric W. Stawiski, Peter M. Haverty, Zhao-Shi Jiang, Han-Bin Liu, Jeremiah Degenhardt, Oleg Mayba, Florian Gnad, Jin-Feng Liu, Gregoire Pau ...Show all 30 authors... , Jens Reeder, Yi Cao, Kiran Mukhyala, Suresh K. Selvaraj, Ma-Mie Yu, Gregory J. Zynda, Matthew J. Brauer, Thomas D. Wu, Robert Clifford Gentleman, Gerard Manning, Robert L. Yauch, Richard Bourgon, David Stokoe, Zora Modrusan, Richard M. Neve, Frederic J. de Sauvage, Jeffrey Settleman, Somasekar Seshagiri, Ze-Min Zhang; Show fewer authors
A comprehensive transcriptional portrait of human cancer cell lines.
Nat. Biotechnol. 33:306-312(2015)

PubMed=25877200; DOI=10.1038/nature14397
Ma-Mie Yu, Suresh K. Selvaraj, May M.Y. Liang-Chu, Sahar Aghajani, Matthew Busse, Jean Yuan, Genee Lee, Franklin V. Peale, Christiaan Klijn, Richard Bourgon, Joshua S. Kaminker, Richard M. Neve;
A resource for cell line authentication, annotation and quality control.
Nature 520:307-311(2015)

PubMed=26589293; DOI=10.1186/s13073-015-0240-5; PMCID=PMC4653878
Jelle Scholtalbers, Sebastian Boegel, Thomas Bukur, Marius Byl, Sebastian Goerges, Patrick Sorn, Martin Loewer, Ugur Sahin, John C. Castle;
TCLP: an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression.
Genome Med. 7:118.1-118.7(2015)

PubMed=29435981; DOI=10.1002/ijc.31304
Hyun Jeong Kim, Sun Kyoung Kang, Woo Sun Kwon, Tae Soo Kim, Inhye Jeong, Hei-Cheul Jeung, Michael Kragh, Ivan D. Horak, Hyun Cheol Chung, Sun Young Rha;
Forty-nine gastric cancer cell lines with integrative genomic profiling for development of c-MET inhibitor.
Int. J. Cancer 143:151-159(2018)

PubMed=32028591; DOI=10.3390/cancers12020334; PMCID=PMC7072281
Jin Won Kim, Ahrum Min, Seock-Ah Im, Hyemin Jang, Yu Jin Kim, Hee-Jun Kim, Kyung-Hun Lee, Tae-Yong Kim, Keun Wook Lee, Do-Youn Oh, Jee-Hyun Kim, Yung-Jue Bang;
TDP1 and TOP1 modulation in olaparib-resistant cancer determines the efficacy of subsequent chemotherapy.
Cancers (Basel) 12:334.1-334.17(2020)

Cross-references
Cell line collections (Providers) KCLB; 00484
Cell line databases/resources cancercelllines; CVCL_0100
CGH-DB; 125-1
CGH-DB; 9013-4
Anatomy/cell type resources BTO; BTO_0003479
Biological sample resources BioSample; SAMN03473176
Chemistry resources PharmacoDB; SNU484_1467_2019
Encyclopedic resources Wikidata; Q54955211
Experimental variables resources EFO; EFO_0006755
Gene expression databases ArrayExpress; E-MTAB-2706
GEO; GSM1374892
Polymorphism and mutation databases Cosmic; 685590
Cosmic; 848140
Cosmic; 921598
Cosmic; 1067206
Cosmic; 1090454
Cosmic; 1294958
Cosmic; 1528875
Cosmic; 2484965
Cosmic; 2646591
Cosmic; 2807646
IARC_TP53; 7419
Sequence databases EGA; EGAS00001000610
Entry history
Entry creation04-Apr-2012
Last entry update10-Apr-2025
Version number34