ID   HCC1954
AC   CVCL_1259
SY   HCC-1954; Hamon Cancer Center 1954
DR   BTO; BTO_0005368
DR   CLO; CLO_0003647
DR   EFO; EFO_0001175
DR   ArrayExpress; E-MTAB-38
DR   ArrayExpress; E-MTAB-783
DR   ArrayExpress; E-MTAB-2706
DR   ArrayExpress; E-MTAB-2770
DR   ArrayExpress; E-MTAB-3610
DR   ArrayExpress; E-TABM-157
DR   ATCC; CRL-2338
DR   BCRJ; 0280
DR   BioGRID_ORCS_Cell_line; 425
DR   BioSample; SAMN03473018
DR   BioSample; SAMN10987850
DR   cancercelllines; CVCL_1259
DR   Cell_Model_Passport; SIDM00872
DR   ChEMBL-Cells; CHEMBL3308107
DR   ChEMBL-Targets; CHEMBL1075459
DR   CLS; 305268
DR   Cosmic; 749709
DR   Cosmic; 904369
DR   Cosmic; 1136367
DR   Cosmic; 1235077
DR   Cosmic; 1287889
DR   Cosmic; 1308993
DR   Cosmic; 1430345
DR   Cosmic; 1473150
DR   Cosmic; 1518107
DR   Cosmic; 1603208
DR   Cosmic; 1717243
DR   Cosmic; 1935009
DR   Cosmic; 1995428
DR   Cosmic; 2165007
DR   Cosmic-CLP; 749709
DR   DepMap; ACH-000859
DR   EGA; EGAS00001000610
DR   EGA; EGAS00001000978
DR   GDSC; 749709
DR   GEO; GSM185081
DR   GEO; GSM185082
DR   GEO; GSM186724
DR   GEO; GSM217578
DR   GEO; GSM219962
DR   GEO; GSM274675
DR   GEO; GSM303673
DR   GEO; GSM303675
DR   GEO; GSM303680
DR   GEO; GSM303682
DR   GEO; GSM303684
DR   GEO; GSM303687
DR   GEO; GSM303689
DR   GEO; GSM303691
DR   GEO; GSM303695
DR   GEO; GSM303698
DR   GEO; GSM303700
DR   GEO; GSM303704
DR   GEO; GSM303707
DR   GEO; GSM303709
DR   GEO; GSM303712
DR   GEO; GSM303715
DR   GEO; GSM303719
DR   GEO; GSM303721
DR   GEO; GSM303723
DR   GEO; GSM303726
DR   GEO; GSM303729
DR   GEO; GSM303731
DR   GEO; GSM303735
DR   GEO; GSM303738
DR   GEO; GSM303740
DR   GEO; GSM303742
DR   GEO; GSM303745
DR   GEO; GSM303747
DR   GEO; GSM303750
DR   GEO; GSM303753
DR   GEO; GSM303754
DR   GEO; GSM303760
DR   GEO; GSM303762
DR   GEO; GSM303766
DR   GEO; GSM303769
DR   GEO; GSM303770
DR   GEO; GSM303775
DR   GEO; GSM303777
DR   GEO; GSM303780
DR   GEO; GSM303784
DR   GEO; GSM303786
DR   GEO; GSM303789
DR   GEO; GSM337683
DR   GEO; GSM337684
DR   GEO; GSM337685
DR   GEO; GSM337686
DR   GEO; GSM337687
DR   GEO; GSM337688
DR   GEO; GSM337689
DR   GEO; GSM337690
DR   GEO; GSM337691
DR   GEO; GSM337692
DR   GEO; GSM337693
DR   GEO; GSM337694
DR   GEO; GSM337695
DR   GEO; GSM344374
DR   GEO; GSM344424
DR   GEO; GSM350499
DR   GEO; GSM481299
DR   GEO; GSM718290
DR   GEO; GSM783937
DR   GEO; GSM847341
DR   GEO; GSM847483
DR   GEO; GSM887046
DR   GEO; GSM888116
DR   GEO; GSM1008901
DR   GEO; GSM1053712
DR   GEO; GSM1172871
DR   GEO; GSM1172962
DR   GEO; GSM1215272
DR   GEO; GSM1374508
DR   GEO; GSM1374509
DR   GEO; GSM1401665
DR   GEO; GSM1669852
DR   GEO; GSM2258830
DR   GEO; GSM2258831
DR   GEO; GSM2258832
DR   GEO; GSM2258833
DR   GEO; GSM2258834
DR   GEO; GSM2258835
DR   GEO; GSM2258836
DR   GEO; GSM2258837
DR   GEO; GSM2258838
DR   GEO; GSM2258839
DR   GEO; GSM2258840
DR   GEO; GSM2258841
DR   GEO; GSM2258842
DR   GEO; GSM2258843
DR   GEO; GSM2258844
DR   GEO; GSM2258845
DR   GEO; GSM2258846
DR   GEO; GSM2258847
DR   GEO; GSM2258929
DR   GEO; GSM2258930
DR   GEO; GSM2258931
DR   GEO; GSM3258551
DR   IARC_TP53; 21363
DR   IGRhCellID; HCC1954
DR   KCLB; 9S1954
DR   LiGeA; CCLE_705
DR   LINCS_HMS; 50213
DR   LINCS_LDP; LCL-1332
DR   Lonza; 1357
DR   PharmacoDB; HCC1954_486_2019
DR   PRIDE; PXD002486
DR   PRIDE; PXD005339
DR   PRIDE; PXD030304
DR   Progenetix; CVCL_1259
DR   PubChem_Cell_line; CVCL_1259
DR   SLKBase; 3543
DR   Wikidata; Q54881618
RX   PubMed=9833771;
RX   PubMed=11314036;
RX   PubMed=16959974;
RX   PubMed=17157791;
RX   PubMed=17932254;
RX   PubMed=19582160;
RX   PubMed=20070913;
RX   PubMed=20164919;
RX   PubMed=20215515;
RX   PubMed=21378333;
RX   PubMed=22460905;
RX   PubMed=22585861;
RX   PubMed=23151021;
RX   PubMed=23601657;
RX   PubMed=23637631;
RX   PubMed=24094812;
RX   PubMed=24162158;
RX   PubMed=24176112;
RX   PubMed=25485619;
RX   PubMed=25877200;
RX   PubMed=25960936;
RX   PubMed=25984343;
RX   PubMed=26589293;
RX   PubMed=27397505;
RX   PubMed=28196595;
RX   PubMed=28287265;
RX   PubMed=28889351;
RX   PubMed=29273624;
RX   PubMed=30894373;
RX   PubMed=30971826;
RX   PubMed=31068700;
RX   PubMed=31978347;
RX   PubMed=35839778;
WW   Info; LINCS; ICBP43; https://lincs.hms.harvard.edu/resources/reagents/icbp43/
WW   Info; MCLP; -; https://tcpaportal.org/mclp/
WW   Info; Pawefish; -; https://www.cellosaurus.org/pawefish/BreastCellLineDescriptions/HCC1954.html
WW   Info; Synapse; JWGray panel; https://www.synapse.org/#!Synapse:syn2346643/wiki/62255
WW   Provider; Altogen; Xenograft model; https://altogenlabs.com/xenograft-models/breast-cancer-xenograft/hcc1954-xenograft-model/
WW   Provider; UT Southwestern; -; https://www.utsouthwestern.edu/edumedia/edufiles/about_us/admin_offices/technology_development/available_technologies/cell-lines.pdf
CC   Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE).
CC   Part of: COSMIC cell lines project.
CC   Part of: ICBP43 breast cancer cell line panel.
CC   Part of: JWGray breast cancer cell line panel.
CC   Part of: KuDOS 95 cell line panel.
CC   Part of: MD Anderson Cell Lines Project.
CC   Population: East Indian.
CC   Doubling time: 45 hours (PubMed=25984343); 43.81 hours (JWGray panel).
CC   HLA typing: A*24:02,24:02; B*35:01,40:06; C*04:01,15:02; DQA1*03:02,01:02; DRB1*16:05,16:05 (PubMed=25960936).
CC   HLA typing: A*24:02,24:02; B*35:01,40:06; C*04:01,15:02 (PubMed=26589293).
CC   Microsatellite instability: Stable (MSS) (Sanger).
CC   Sequence variation: Gene fusion; HGNC; HGNC:2092; CLTC + HGNC; HGNC:29559; VMP1; Name(s)=CLTC-VMP1 (PubMed=23637631).
CC   Sequence variation: Mutation; HGNC; HGNC:8975; PIK3CA; Simple; p.His1047Arg (c.3140A>G); ClinVar=VCV000013652; Zygosity=Heterozygous (ATCC=CRL-2338).
CC   Sequence variation: Mutation; HGNC; HGNC:11998; TP53; Simple; p.Tyr163Cys (c.488A>G); ClinVar=VCV000127814; Zygosity=Homozygous (PubMed=28889351; ATCC=CRL-2338).
CC   Omics: Genomics; ChIP-seq; H2BK120ub.
CC   Omics: Genomics; ChIP-seq; H3K23ac.
CC   Omics: Genomics; ChIP-seq; H3K27ac.
CC   Omics: Genomics; ChIP-seq; H3K27me3.
CC   Omics: Genomics; ChIP-seq; H3K36me3.
CC   Omics: Genomics; ChIP-seq; H3K4me1.
CC   Omics: Genomics; ChIP-seq; H3K4me3.
CC   Omics: Genomics; ChIP-seq; H3K79me2.
CC   Omics: Genomics; ChIP-seq; H3K9ac.
CC   Omics: Genomics; ChIP-seq; H3K9me3.
CC   Omics: Genomics; ChIP-seq; H4K8ac.
CC   Omics: Genomics; Chromosome conformation analysis; Hi-C.
CC   Omics: Genomics; DNA methylation analysis.
CC   Omics: Genomics; Whole exome sequencing.
CC   Omics: Phenotyping; CRISPR screening.
CC   Omics: Phenotyping; Drug screening.
CC   Omics: Phenotyping; shRNA library screening.
CC   Omics: Proteomics; Expression; Reverse-phase protein array.
CC   Omics: Proteomics; PTM; Glycoproteome.
CC   Omics: Proteomics; Quantitative.
CC   Omics: Transcriptomics; Microarray.
CC   Omics: Transcriptomics; miRNA profiling; Microarray.
CC   Omics: Transcriptomics; RNAseq.
CC   Omics: Variations; Array-based CGH.
CC   Omics: Variations; CNV analysis.
CC   Omics: Variations; SNP array analysis.
CC   Genome ancestry: African=0.47%; Native American=0%; East Asian, North=5.83%; East Asian, South=0%; South Asian=78.3%; European, North=2.65%; European, South=12.74% (PubMed=30894373).
CC   Miscellaneous: Direct author submission of STR profile from Girard, Luc & Gazdar, Adi F.
CC   Derived from site: In situ; Breast; UBERON=UBERON_0000310.
ST   Source(s): ATCC=CRL-2338; Cosmic-CLP=749709; Direct_author_submission; PubMed=25877200; PubMed=28889351; Technion Genomics Center
ST   Amelogenin: X
ST   CSF1PO: 10
ST   D10S1248: 14 (Direct_author_submission)
ST   D10S1248: 14,15 (Technion Genomics Center)
ST   D12S391: 22
ST   D13S317: 8,9
ST   D16S539: 9,11
ST   D18S51: 14,18
ST   D19S433: 13,15.2
ST   D1S1656: 15,16 (Technion Genomics Center)
ST   D1S1656: 16 (Direct_author_submission)
ST   D21S11: 28,32.2 (ATCC=CRL-2338; PubMed=25877200; PubMed=28889351; Technion Genomics Center)
ST   D21S11: 32.2 (Direct_author_submission)
ST   D22S1045: 11,15
ST   D2S1338: 17 (Direct_author_submission)
ST   D2S1338: 17,26 (ATCC=CRL-2338; Technion Genomics Center)
ST   D2S441: 10,11
ST   D3S1358: 15,16
ST   D5S818: 11
ST   D7S820: 10,11
ST   D8S1179: 12,15
ST   FGA: 22,23
ST   Penta D: 9,12
ST   Penta E: 12,16
ST   TH01: 6,7
ST   TPOX: 8,9
ST   vWA: 18,19
DI   NCIt; C4017; Breast ductal carcinoma
OX   NCBI_TaxID=9606; ! Homo sapiens (Human)
OI   CVCL_1260 ! HCC1954 BL
SX   Female
AG   61Y
CA   Cancer cell line
DT   Created: 04-04-12; Last updated: 14-08-25; Version: 52
//
RX   PubMed=9833771; DOI=10.1002/(SICI)1097-0215(19981209)78:6<766::AID-IJC15>3.0.CO;2-L;
RA   Gazdar, Adi F.
RA   Kurvari, Venkatesh
RA   Virmani, Arvind K.
RA   Gollahon, Lauren S.
RA   Sakaguchi, Masahiro
RA   Westerfield, Max
RA   Kodagoda, Dulmini R.
RA   Stasny, Victor
RA   Cunningham, H. Thomas
RA   Wistuba, Ignacio Ivan
RA   Tomlinson, Gail E.
RA   Tonk, Vijay
RA   Ashfaq, Raheela
RA   Leitch, A. Marilyn
RA   Minna, John D.
RA   Shay, Jerry W.
RT   "Characterization of paired tumor and non-tumor cell lines established
RT   from patients with breast cancer.";
RL   Int. J. Cancer 78:766-774(1998).
//
RX   PubMed=11314036; DOI=10.1038/sj.onc.1204211;
RA   Forgacs, Eva
RA   Wren, Jonathan D.
RA   Kamibayashi, Craig
RA   Kondo, Masashi
RA   Xu, Xie L.
RA   Markowitz, Sanford David
RA   Tomlinson, Gail E.
RA   Muller, Carolyn Y.
RA   Gazdar, Adi F.
RA   Garner, Harold Ray
RA   Minna, John D.
RT   "Searching for microsatellite mutations in coding regions in lung,
RT   breast, ovarian and colorectal cancers.";
RL   Oncogene 20:1005-1009(2001).
//
RX   PubMed=16959974; DOI=10.1126/science.1133427;
RA   Sjoblom, Tobias
RA   Jones, Sian
RA   Wood, Laura DeLong
RA   Parsons, D. Williams
RA   Lin, Jimmy
RA   Barber, Thomas D.
RA   Mandelker, Diana
RA   Leary, Rebecca J.
RA   Ptak, Janine
RA   Silliman, Natalie
RA   Szabo, Steve
RA   Buckhaults, Phillip
RA   Farrell, Christopher
RA   Meeh, Paul
RA   Markowitz, Sanford David
RA   Willis, Joseph E.
RA   Dawson, Dawn
RA   Willson, James K.V.
RA   Gazdar, Adi F.
RA   Hartigan, James
RA   Wu, Leo
RA   Liu, Chang-Sheng
RA   Parmigiani, Giovanni
RA   Park, Ben Ho
RA   Bachman, Kurtis E.
RA   Papadopoulos, Nickolas
RA   Vogelstein, Bert
RA   Kinzler, Kenneth Wayne
RA   Velculescu, Victor E.
RT   "The consensus coding sequences of human breast and colorectal
RT   cancers.";
RL   Science 314:268-274(2006).
//
RX   PubMed=17157791; DOI=10.1016/j.ccr.2006.10.008; PMCID=PMC2730521;
RA   Neve, Richard M.
RA   Chin, Koei
RA   Fridlyand, Jane
RA   Yeh, Jennifer
RA   Baehner, Frederick L.
RA   Fevr, Tea
RA   Clark, Laura
RA   Bayani, Nora
RA   Coppe, Jean-Philippe
RA   Tong, Frances
RA   Speed, Terry
RA   Spellman, Paul T.
RA   DeVries, Sandy
RA   Lapuk, Anna
RA   Wang, Nick J.
RA   Kuo, Wen-Lin
RA   Stilwell, Jackie L.
RA   Pinkel, Daniel
RA   Albertson, Donna G.
RA   Waldman, Frederic M.
RA   McCormick, Frank
RA   Dickson, Robert Brent
RA   Johnson, Michael D.
RA   Lippman, Marc E.
RA   Ethier, Stephen P.
RA   Gazdar, Adi F.
RA   Gray, Joe W.
RT   "A collection of breast cancer cell lines for the study of
RT   functionally distinct cancer subtypes.";
RL   Cancer Cell 10:515-527(2006).
//
RX   PubMed=17932254; DOI=10.1126/science.1145720;
RA   Wood, Laura DeLong
RA   Parsons, D. Williams
RA   Jones, Sian
RA   Lin, Jimmy
RA   Sjoblom, Tobias
RA   Leary, Rebecca J.
RA   Shen, Dong
RA   Boca, Simina M.
RA   Barber, Thomas D.
RA   Ptak, Janine
RA   Silliman, Natalie
RA   Szabo, Steve
RA   Dezso, Zoltan
RA   Ustyanksky, Vadim
RA   Nikolskaya, Tatiana
RA   Nikolsky, Yuri
RA   Karchin, Rachel
RA   Wilson, Paul A.
RA   Kaminker, Joshua S.
RA   Zhang, Ze-Min
RA   Croshaw, Randal
RA   Willis, Joseph E.
RA   Dawson, Dawn
RA   Shipitsin, Michail
RA   Willson, James K.V.
RA   Sukumar, Saraswati
RA   Polyak, Kornelia
RA   Park, Ben Ho
RA   Pethiyagoda, Charit L.
RA   Pant, P.V. Krishna
RA   Ballinger, Dennis G.
RA   Sparks, Andrew B.
RA   Hartigan, James
RA   Smith, Douglas R.
RA   Suh, Erick
RA   Papadopoulos, Nickolas
RA   Buckhaults, Phillip
RA   Markowitz, Sanford David
RA   Parmigiani, Giovanni
RA   Kinzler, Kenneth Wayne
RA   Velculescu, Victor E.
RA   Vogelstein, Bert
RT   "The genomic landscapes of human breast and colorectal cancers.";
RL   Science 318:1108-1113(2007).
//
RX   PubMed=19582160; DOI=10.1371/journal.pone.0006146; PMCID=PMC2702084;
RA   Kao, Jessica
RA   Salari, Keyan
RA   Bocanegra, Melanie
RA   Choi, Yoon-La
RA   Girard, Luc
RA   Gandhi, Jeet
RA   Kwei, Kevin A.
RA   Hernandez-Boussard, Tina
RA   Wang, Pei
RA   Gazdar, Adi F.
RA   Minna, John D.
RA   Pollack, Jonathan R.
RT   "Molecular profiling of breast cancer cell lines defines relevant
RT   tumor models and provides a resource for cancer gene discovery.";
RL   PLoS ONE 4:e6146.1-e6146.16(2009).
//
RX   PubMed=20070913; DOI=10.1186/1471-2407-10-15; PMCID=PMC2836299;
RA   Tsuji, Katumi
RA   Kawauchi, Shigeto
RA   Saito, Soichiro
RA   Furuya, Tomoko
RA   Ikemoto, Kenzo
RA   Nakao, Motonao
RA   Yamamoto, Shigeru
RA   Oka, Masaaki
RA   Hirano, Takashi
RA   Sasaki, Kohsuke
RT   "Breast cancer cell lines carry cell line-specific genomic alterations
RT   that are distinct from aberrations in breast cancer tissues:
RT   comparison of the CGH profiles between cancer cell lines and primary
RT   cancer tissues.";
RL   BMC Cancer 10:15.1-15.10(2010).
//
RX   PubMed=20164919; DOI=10.1038/nature08768; PMCID=PMC3145113;
RA   Bignell, Graham Robert
RA   Greenman, Christopher D.
RA   Davies, Helen R.
RA   Butler, Adam P.
RA   Edkins, Sarah
RA   Andrews, Jenny M.
RA   Buck, Gemma
RA   Chen, Lina
RA   Beare, David
RA   Latimer, Calli
RA   Widaa, Sara
RA   Hinton, Jonathan
RA   Fahey, Ciara
RA   Fu, Bei-Yuan
RA   Swamy, Sajani
RA   Dalgliesh, Gillian L.
RA   Teh, Bin Tean
RA   Deloukas, Panos
RA   Yang, Feng-Tang
RA   Campbell, Peter J.
RA   Futreal, P. Andrew
RA   Stratton, Michael Rudolf
RT   "Signatures of mutation and selection in the cancer genome.";
RL   Nature 463:893-898(2010).
//
RX   PubMed=20215515; DOI=10.1158/0008-5472.CAN-09-3458; PMCID=PMC2881662;
RA   Rothenberg, S. Michael
RA   Mohapatra, Gayatry
RA   Rivera, Miguel N.
RA   Winokur, Daniel
RA   Greninger, Patricia
RA   Nitta, Mai
RA   Sadow, Peter M.
RA   Sooriyakumar, Gaya
RA   Brannigan, Brian W.
RA   Ulman, Matthew J.
RA   Perera, Rushika M.
RA   Wang, Rui
RA   Tam, Angela
RA   Ma, Xiao-Jun
RA   Erlander, Mark
RA   Sgroi, Dennis C.
RA   Rocco, James W.
RA   Lingen, Mark W.
RA   Cohen, Ezra E.W.
RA   Louis, David Neil
RA   Settleman, Jeffrey
RA   Haber, Daniel Arie
RT   "A genome-wide screen for microdeletions reveals disruption of
RT   polarity complex genes in diverse human cancers.";
RL   Cancer Res. 70:2158-2164(2010).
//
RX   PubMed=21378333;
RA   Ford, Christopher H.J.
RA   Al-Bader, Maie
RA   Al-Ayadhi, Bushra
RA   Francis, Issam
RT   "Reassessment of estrogen receptor expression in human breast cancer
RT   cell lines.";
RL   Anticancer Res. 31:521-527(2011).
//
RX   PubMed=22460905; DOI=10.1038/nature11003; PMCID=PMC3320027;
RA   Barretina, Jordi Ginesta
RA   Caponigro, Giordano
RA   Stransky, Nicolas
RA   Venkatesan, Kavitha
RA   Margolin, Adam A.
RA   Kim, Sungjoon
RA   Wilson, Christopher J.
RA   Lehar, Joseph
RA   Kryukov, Gregory V.
RA   Sonkin, Dmitriy
RA   Reddy, Anupama
RA   Liu, Manway
RA   Murray, Lauren
RA   Berger, Michael F.
RA   Monahan, John E.
RA   Morais, Paula
RA   Meltzer, Jodi
RA   Korejwa, Adam
RA   Jane-Valbuena, Judit
RA   Mapa, Felipa A.
RA   Thibault, Joseph
RA   Bric-Furlong, Eva
RA   Raman, Pichai
RA   Shipway, Aaron
RA   Engels, Ingo H.
RA   Cheng, Jill
RA   Yu, Guo-Ying K.
RA   Yu, Jian-Jun
RA   Aspesi, Peter Jr.
RA   de Silva, Melanie
RA   Jagtap, Kalpana
RA   Jones, Michael D.
RA   Wang, Li
RA   Hatton, Charles
RA   Palescandolo, Emanuele
RA   Gupta, Supriya
RA   Mahan, Scott
RA   Sougnez, Carrie
RA   Onofrio, Robert C.
RA   Liefeld, Ted
RA   MacConaill, Laura E.
RA   Winckler, Wendy
RA   Reich, Michael
RA   Li, Nan-Xin
RA   Mesirov, Jill P.
RA   Gabriel, Stacey B.
RA   Getz, Gad
RA   Ardlie, Kristin
RA   Chan, Vivien
RA   Myer, Vic E.
RA   Weber, Barbara L.
RA   Porter, Jeff
RA   Warmuth, Markus
RA   Finan, Peter
RA   Harris, Jennifer L.
RA   Meyerson, Matthew Langer
RA   Golub, Todd Robert
RA   Morrissey, Michael P.
RA   Sellers, William Raj
RA   Schlegel, Robert
RA   Garraway, Levi Alexander
RT   "The Cancer Cell Line Encyclopedia enables predictive modelling of
RT   anticancer drug sensitivity.";
RL   Nature 483:603-607(2012).
//
RX   PubMed=22585861; DOI=10.1158/2159-8290.CD-11-0224; PMCID=PMC5057396;
RA   Marcotte, Richard
RA   Brown, Kevin R.
RA   Suarez Saiz, Fernando Jose
RA   Sayad, Azin
RA   Karamboulas, Konstantina
RA   Krzyzanowski, Paul M.
RA   Sircoulomb, Fabrice
RA   Medrano, Mauricio
RA   Fedyshyn, Yaroslav
RA   Koh, Judice Lie-Yong
RA   van Dyk, Dewald
RA   Fedyshyn, Bohdana
RA   Luhova, Marianna
RA   Brito, Glauber C.
RA   Vizeacoumar, Franco J.
RA   Vizeacoumar, Frederick S.
RA   Datti, Alessandro
RA   Kasimer, Dahlia
RA   Buzina, Alla
RA   Mero, Patricia
RA   Misquitta, Christine
RA   Normand, Josee
RA   Haider, Maliha
RA   Ketela, Troy
RA   Wrana, Jeffrey L.
RA   Rottapel, Robert
RA   Neel, Benjamin G.
RA   Moffat, Jason
RT   "Essential gene profiles in breast, pancreatic, and ovarian cancer
RT   cells.";
RL   Cancer Discov. 2:172-189(2012).
//
RX   PubMed=23151021; DOI=10.1186/1471-2164-13-619; PMCID=PMC3546428;
RA   Grigoriadis, Anita
RA   Mackay, Alan
RA   Noel, Elodie
RA   Wu, Pei-Jun
RA   Natrajan, Rachael
RA   Frankum, Jessica
RA   Reis-Filho, Jorge Sergio
RA   Tutt, Andrew
RT   "Molecular characterisation of cell line models for triple-negative
RT   breast cancers.";
RL   BMC Genomics 13:619.1-619.14(2012).
//
RX   PubMed=23601657; DOI=10.1186/bcr3415; PMCID=PMC3672661;
RA   Riaz, Muhammad
RA   van Jaarsveld, Marijn T.M.
RA   Hollestelle, Antoinette
RA   Prager-van der Smissen, Wendy J.C.
RA   Heine, Anouk A.J.
RA   Boersma, Antonius W.M.
RA   Liu, Jing-Jing
RA   Helmijr, Jean C.A.
RA   Ozturk, Bahar
RA   Smid, Marcel
RA   Wiemer, Erik A.C.
RA   Foekens, John A.
RA   Martens, John W.M.
RT   "miRNA expression profiling of 51 human breast cancer cell lines
RT   reveals subtype and driver mutation-specific miRNAs.";
RL   Breast Cancer Res. 15:R33.1-R33.17(2013).
//
RX   PubMed=23637631; DOI=10.1371/journal.pgen.1003464; PMCID=PMC3636093;
RA   Giacomini, Craig P.
RA   Sun, Steven
RA   Varma, Sushama
RA   Shain, Alan Hunter
RA   Giacomini, Marilyn M.
RA   Balagtas, Jay Michael S.
RA   Sweeney, Robert T.
RA   Lai, Everett
RA   Del Vecchio, Catherine A.
RA   Forster, Andrew D.
RA   Clarke, Nicole
RA   Montgomery, Kelli D.
RA   Zhu, Shirley
RA   Wong, Albert J.
RA   van de Rijn, Matt
RA   West, Robert B.
RA   Pollack, Jonathan R.
RT   "Breakpoint analysis of transcriptional and genomic profiles uncovers
RT   novel gene fusions spanning multiple human cancer types.";
RL   PLoS Genet. 9:e1003464.1-e1003464.19(2013).
//
RX   PubMed=24094812; DOI=10.1016/j.ccr.2013.08.020; PMCID=PMC3931310;
RA   Timmerman, Luika A.
RA   Holton, Thomas
RA   Yuneva, Mariia
RA   Louie, Raymond J.
RA   Padro, Merce
RA   Daemen, Anneleen
RA   Hu, Min
RA   Chan, Denise A.
RA   Ethier, Stephen P.
RA   van 't Veer, Laura J.
RA   Polyak, Kornelia
RA   McCormick, Frank
RA   Gray, Joe W.
RT   "Glutamine sensitivity analysis identifies the xCT antiporter as a
RT   common triple-negative breast tumor therapeutic target.";
RL   Cancer Cell 24:450-465(2013).
//
RX   PubMed=24162158; DOI=10.1007/s10549-013-2743-3; PMCID=PMC3832776;
RA   Prat, Aleix
RA   Karginova, Olga
RA   Parker, Joel S.
RA   Fan, Cheng
RA   He, Xia-Ping
RA   Bixby, Lisa M.
RA   Harrell, J. Chuck
RA   Roman, Erick
RA   Adamo, Barbara
RA   Troester, Melissa A.
RA   Perou, Charles M.
RT   "Characterization of cell lines derived from breast cancers and normal
RT   mammary tissues for the study of the intrinsic molecular subtypes.";
RL   Breast Cancer Res. Treat. 142:237-255(2013).
//
RX   PubMed=24176112; DOI=10.1186/gb-2013-14-10-r110; PMCID=PMC3937590;
RA   Daemen, Anneleen
RA   Griffith, Obi L.
RA   Heiser, Laura M.
RA   Wang, Nicholas J.
RA   Enache, Oana M.
RA   Sanborn, Zachary
RA   Pepin, Francois
RA   Durinck, Steffen
RA   Korkola, James E.
RA   Griffith, Malachi
RA   Hur, Joe S.
RA   Huh, Nam
RA   Chung, Jongsuk
RA   Cope, Leslie
RA   Fackler, Mary Jo
RA   Umbricht, Christopher Benedict
RA   Sukumar, Saraswati
RA   Seth, Pankaj
RA   Sukhatme, Vikas P.
RA   Jakkula, Lakshmi R.
RA   Lu, Yi-Ling
RA   Mills, Gordon B.
RA   Cho, Raymond J.
RA   Collisson, Eric A.
RA   van 't Veer, Laura J.
RA   Spellman, Paul T.
RA   Gray, Joe W.
RT   "Modeling precision treatment of breast cancer.";
RL   Genome Biol. 14:R110.1-R110.14(2013).
//
RX   PubMed=25485619; DOI=10.1038/nbt.3080;
RA   Klijn, Christiaan
RA   Durinck, Steffen
RA   Stawiski, Eric W.
RA   Haverty, Peter M.
RA   Jiang, Zhao-Shi
RA   Liu, Han-Bin
RA   Degenhardt, Jeremiah
RA   Mayba, Oleg
RA   Gnad, Florian
RA   Liu, Jin-Feng
RA   Pau, Gregoire
RA   Reeder, Jens
RA   Cao, Yi
RA   Mukhyala, Kiran
RA   Selvaraj, Suresh K.
RA   Yu, Ma-Mie
RA   Zynda, Gregory J.
RA   Brauer, Matthew J.
RA   Wu, Thomas D.
RA   Gentleman, Robert Clifford
RA   Manning, Gerard
RA   Yauch, Robert L.
RA   Bourgon, Richard
RA   Stokoe, David
RA   Modrusan, Zora
RA   Neve, Richard M.
RA   de Sauvage, Frederic J.
RA   Settleman, Jeffrey
RA   Seshagiri, Somasekar
RA   Zhang, Ze-Min
RT   "A comprehensive transcriptional portrait of human cancer cell
RT   lines.";
RL   Nat. Biotechnol. 33:306-312(2015).
//
RX   PubMed=25877200; DOI=10.1038/nature14397;
RA   Yu, Ma-Mie
RA   Selvaraj, Suresh K.
RA   Liang-Chu, May M.Y.
RA   Aghajani, Sahar
RA   Busse, Matthew
RA   Yuan, Jean
RA   Lee, Genee
RA   Peale, Franklin V.
RA   Klijn, Christiaan
RA   Bourgon, Richard
RA   Kaminker, Joshua S.
RA   Neve, Richard M.
RT   "A resource for cell line authentication, annotation and quality
RT   control.";
RL   Nature 520:307-311(2015).
//
RX   PubMed=25960936; DOI=10.4161/21624011.2014.954893; PMCID=PMC4355981;
RA   Boegel, Sebastian
RA   Lower, Martin
RA   Bukur, Thomas
RA   Sahin, Ugur
RA   Castle, John C.
RT   "A catalog of HLA type, HLA expression, and neo-epitope candidates in
RT   human cancer cell lines.";
RL   OncoImmunology 3:e954893.1-e954893.12(2014).
//
RX   PubMed=25984343; DOI=10.1038/sdata.2014.35; PMCID=PMC4432652;
RA   Cowley, Glenn S.
RA   Weir, Barbara A.
RA   Vazquez, Francisca
RA   Tamayo, Pablo
RA   Scott, Justine A.
RA   Rusin, Scott
RA   East-Seletsky, Alexandra
RA   Ali, Levi D.
RA   Gerath, William F.J.
RA   Pantel, Sarah E.
RA   Lizotte, Patrick Hall
RA   Jiang, Guo-Zhi
RA   Hsiao, Jessica
RA   Tsherniak, Aviad
RA   Dwinell, Elizabeth
RA   Aoyama, Simon
RA   Okamoto, Michael
RA   Harrington, William
RA   Gelfand, Ellen T.
RA   Green, Thomas M.
RA   Tomko, Mark J.
RA   Gopal, Shuba
RA   Wong, Terence C.
RA   Li, Hu-Bo
RA   Howell, Sara
RA   Stransky, Nicolas
RA   Liefeld, Ted
RA   Jang, Dongkeun
RA   Bistline, Jonathan
RA   Meyers, Barbara Hill
RA   Armstrong, Scott Allen
RA   Anderson, Kenneth Carl
RA   Stegmaier, Kimberly
RA   Reich, Michael
RA   Pellman, David
RA   Boehm, Jesse S.
RA   Mesirov, Jill P.
RA   Golub, Todd Robert
RA   Root, David E.
RA   Hahn, William Chun
RT   "Parallel genome-scale loss of function screens in 216 cancer cell
RT   lines for the identification of context-specific genetic
RT   dependencies.";
RL   Sci. Data 1:140035.1-140035.12(2014).
//
RX   PubMed=26589293; DOI=10.1186/s13073-015-0240-5; PMCID=PMC4653878;
RA   Scholtalbers, Jelle
RA   Boegel, Sebastian
RA   Bukur, Thomas
RA   Byl, Marius
RA   Goerges, Sebastian
RA   Sorn, Patrick
RA   Loewer, Martin
RA   Sahin, Ugur
RA   Castle, John C.
RT   "TCLP: an online cancer cell line catalogue integrating HLA type,
RT   predicted neo-epitopes, virus and gene expression.";
RL   Genome Med. 7:118.1-118.7(2015).
//
RX   PubMed=27397505; DOI=10.1016/j.cell.2016.06.017; PMCID=PMC4967469;
RA   Iorio, Francesco
RA   Knijnenburg, Theo A.
RA   Vis, Daniel J.
RA   Bignell, Graham Robert
RA   Menden, Michael Patrick
RA   Schubert, Michael
RA   Aben, Nanne
RA   Goncalves, Emanuel
RA   Barthorpe, Syd
RA   Lightfoot, Howard
RA   Cokelaer, Thomas
RA   Greninger, Patricia
RA   van Dyk, Ewald
RA   Chang, Han
RA   de Silva, Heshani
RA   Heyn, Holger
RA   Deng, Xian-Ming
RA   Egan, Regina K.
RA   Liu, Qing-Song
RA   Mironenko, Tatiana
RA   Mitropoulos, Xeni
RA   Richardson, Laura
RA   Wang, Jin-Hua
RA   Zhang, Ting-Hu
RA   Moran, Sebastian
RA   Sayols, Sergi
RA   Soleimani, Maryam
RA   Tamborero, David
RA   Lopez-Bigas, Nuria
RA   Ross-Macdonald, Petra
RA   Esteller, Manel
RA   Gray, Nathanael S.
RA   Haber, Daniel Arie
RA   Stratton, Michael Rudolf
RA   Benes, Cyril Henri
RA   Wessels, Lodewyk F.A.
RA   Saez-Rodriguez, Julio
RA   McDermott, Ultan
RA   Garnett, Mathew J.
RT   "A landscape of pharmacogenomic interactions in cancer.";
RL   Cell 166:740-754(2016).
//
RX   PubMed=28196595; DOI=10.1016/j.ccell.2017.01.005; PMCID=PMC5501076;
RA   Li, Jun
RA   Zhao, Wei
RA   Akbani, Rehan
RA   Liu, Wen-Bin
RA   Ju, Zhen-Lin
RA   Ling, Shi-Yun
RA   Vellano, Christopher P.
RA   Roebuck, Paul
RA   Yu, Qing-Hua
RA   Eterovic, A. Karina
RA   Byers, Lauren Averett
RA   Davies, Michael A.
RA   Deng, Wan-Leng
RA   Gopal, Y.N. Vashisht
RA   Chen, Guo
RA   von Euw, Erika Maria
RA   Slamon, Dennis Joseph
RA   Conklin, Dylan
RA   Heymach, John Victor
RA   Gazdar, Adi F.
RA   Minna, John D.
RA   Myers, Jeffrey N.
RA   Lu, Yi-Ling
RA   Mills, Gordon B.
RA   Liang, Han
RT   "Characterization of human cancer cell lines by reverse-phase protein
RT   arrays.";
RL   Cancer Cell 31:225-239(2017).
//
RX   PubMed=28287265; DOI=10.1021/acs.jproteome.6b00470; PMCID=PMC5557415;
RA   Yen, Ten-Yang
RA   Bowen, Spencer
RA   Yen, Roger
RA   Piryatinska, Alexandra
RA   Macher, Bruce A.
RA   Timpe, Leslie C.
RT   "Glycoproteins in claudin-low breast cancer cell lines have a unique
RT   expression profile.";
RL   J. Proteome Res. 16:1391-1400(2017).
//
RX   PubMed=28889351; DOI=10.1007/s10549-017-4496-x;
RA   Saunus, Jodi M.
RA   Smart, Chanel E.
RA   Kutasovic, Jamie R.
RA   Johnston, Rebecca L.
RA   Kalita-de Croft, Priyakshi
RA   Miranda, Mariska
RA   Rozali, Esdy N.
RA   Vargas, Ana Cristina
RA   Reid, Lynne E.
RA   Lorsy, Eva
RA   Cocciardi, Sibylle
RA   Seidens, Tatjana
RA   McCart Reed, Amy Ellen
RA   Dalley, Andrew J.
RA   Wockner, Leesa F.
RA   Johnson, Julie
RA   Sarkar, Debina
RA   Askarian-Amiri, Marjan E.
RA   Simpson, Peter T.
RA   Khanna, Kum Kum
RA   Chenevix-Trench, Georgia
RA   Al-Ejeh, Fares
RA   Lakhani, Sunil R.
RT   "Multidimensional phenotyping of breast cancer cell lines to guide
RT   preclinical research.";
RL   Breast Cancer Res. Treat. 167:289-301(2018).
//
RX   PubMed=29273624; DOI=10.1101/gr.226019.117; PMCID=PMC5793780;
RA   Franco, Hector L.
RA   Nagari, Anusha
RA   Malladi, Venkat S.
RA   Li, Wen-Qian
RA   Xi, Yuan-Xin
RA   Richardson, Dana
RA   Allton, Kendra L.
RA   Tanaka, Kaori
RA   Li, Jing
RA   Murakami, Shino
RA   Keyomarsi, Khandan
RA   Bedford, Mark T.
RA   Shi, Xiao-Bing
RA   Li, Wei
RA   Barton, Michelle C.
RA   Dent, Sharon Yoder Roth
RA   Kraus, W. Lee
RT   "Enhancer transcription reveals subtype-specific gene expression
RT   programs controlling breast cancer pathogenesis.";
RL   Genome Res. 28:159-170(2018).
//
RX   PubMed=30894373; DOI=10.1158/0008-5472.CAN-18-2747; PMCID=PMC6445675;
RA   Dutil, Julie
RA   Chen, Zhi-Hua
RA   Monteiro, Alvaro N.A.
RA   Teer, Jamie K.
RA   Eschrich, Steven A.
RT   "An interactive resource to probe genetic diversity and estimated
RT   ancestry in cancer cell lines.";
RL   Cancer Res. 79:1263-1273(2019).
//
RX   PubMed=30971826; DOI=10.1038/s41586-019-1103-9;
RA   Behan, Fiona M.
RA   Iorio, Francesco
RA   Picco, Gabriele
RA   Goncalves, Emanuel
RA   Beaver, Charlotte M.
RA   Migliardi, Giorgia
RA   Santos, Rita
RA   Rao, Yanhua
RA   Sassi, Francesco
RA   Pinnelli, Marika
RA   Ansari, Rizwan
RA   Harper, Sarah
RA   Jackson, David Adam
RA   McRae, Rebecca
RA   Pooley, Rachel
RA   Wilkinson, Piers
RA   van der Meer, Dieudonne J.
RA   Dow, David
RA   Buser-Doepner, Carolyn A.
RA   Bertotti, Andrea
RA   Trusolino, Livio
RA   Stronach, Euan Alexander
RA   Saez-Rodriguez, Julio
RA   Yusa, Kosuke
RA   Garnett, Mathew J.
RT   "Prioritization of cancer therapeutic targets using CRISPR-Cas9
RT   screens.";
RL   Nature 568:511-516(2019).
//
RX   PubMed=31068700; DOI=10.1038/s41586-019-1186-3; PMCID=PMC6697103;
RA   Ghandi, Mahmoud
RA   Huang, Franklin W.
RA   Jane-Valbuena, Judit
RA   Kryukov, Gregory V.
RA   Lo, Christopher C.
RA   McDonald, E. Robert 3rd
RA   Barretina, Jordi Ginesta
RA   Gelfand, Ellen T.
RA   Bielski, Craig M.
RA   Li, Hao-Xin
RA   Hu, Kevin
RA   Andreev-Drakhlin, Alexander Y.
RA   Kim, Jaegil
RA   Hess, Julian M.
RA   Haas, Brian J.
RA   Aguet, Francois
RA   Weir, Barbara A.
RA   Rothberg, Michael V.
RA   Paolella, Brenton R.
RA   Lawrence, Michael Scott
RA   Akbani, Rehan
RA   Lu, Yi-Ling
RA   Tiv, Hong L.
RA   Gokhale, Prafulla C.
RA   de Weck, Antoine
RA   Mansour, Ali Amin
RA   Oh, Coyin
RA   Shih, Juliann
RA   Hadi, Kevin
RA   Rosen, Yanay
RA   Bistline, Jonathan
RA   Venkatesan, Kavitha
RA   Reddy, Anupama
RA   Sonkin, Dmitriy
RA   Liu, Manway
RA   Lehar, Joseph
RA   Korn, Joshua M.
RA   Porter, Dale A.
RA   Jones, Michael D.
RA   Golji, Javad
RA   Caponigro, Giordano
RA   Taylor, Jordan E.
RA   Dunning, Caitlin M.
RA   Creech, Amanda L.
RA   Warren, Allison C.
RA   McFarland, James M.
RA   Zamanighomi, Mahdi
RA   Kauffmann, Audrey
RA   Stransky, Nicolas
RA   Imielinski, Marcin
RA   Maruvka, Yosef E.
RA   Cherniack, Andrew D.
RA   Tsherniak, Aviad
RA   Vazquez, Francisca
RA   Jaffe, Jacob D.
RA   Lane, Andrew Alan
RA   Weinstock, David M.
RA   Johannessen, Cory M.
RA   Morrissey, Michael P.
RA   Stegmeier, Frank
RA   Schlegel, Robert
RA   Hahn, William Chun
RA   Getz, Gad
RA   Mills, Gordon B.
RA   Boehm, Jesse S.
RA   Golub, Todd Robert
RA   Garraway, Levi Alexander
RA   Sellers, William Raj
RT   "Next-generation characterization of the Cancer Cell Line
RT   Encyclopedia.";
RL   Nature 569:503-508(2019).
//
RX   PubMed=31978347; DOI=10.1016/j.cell.2019.12.023; PMCID=PMC7339254;
RA   Nusinow, David Paul
RA   Szpyt, John
RA   Ghandi, Mahmoud
RA   Rose, Christopher M.
RA   McDonald, E. Robert 3rd
RA   Kalocsay, Marian
RA   Jane-Valbuena, Judit
RA   Gelfand, Ellen T.
RA   Schweppe, Devin K.
RA   Jedrychowski, Mark P.
RA   Golji, Javad
RA   Porter, Dale A.
RA   Rejtar, Tomas
RA   Wang, Y. Karen
RA   Kryukov, Gregory V.
RA   Stegmeier, Frank
RA   Erickson, Brian K.
RA   Garraway, Levi Alexander
RA   Sellers, William Raj
RA   Gygi, Steven P.
RT   "Quantitative proteomics of the Cancer Cell Line Encyclopedia.";
RL   Cell 180:387-402.e16(2020).
//
RX   PubMed=35839778; DOI=10.1016/j.ccell.2022.06.010; PMCID=PMC9387775;
RA   Goncalves, Emanuel
RA   Poulos, Rebecca C.
RA   Cai, Zhao-Xiang
RA   Barthorpe, Syd
RA   Manda, Srikanth S.
RA   Lucas, Natasha
RA   Beck, Alexandra
RA   Bucio-Noble, Daniel
RA   Dausmann, Michael
RA   Hall, Caitlin
RA   Hecker, Michael
RA   Koh, Jennifer
RA   Lightfoot, Howard
RA   Mahboob, Sadia
RA   Mali, Iman
RA   Morris, James
RA   Richardson, Laura
RA   Seneviratne, Akila J.
RA   Shepherd, Rebecca
RA   Sykes, Erin
RA   Thomas, Frances
RA   Valentini, Sara
RA   Williams, Steven G.
RA   Wu, Yang-Xiu
RA   Xavier, Dylan
RA   MacKenzie, Karen L.
RA   Hains, Peter G.
RA   Tully, Brett
RA   Robinson, Phillip James
RA   Zhong, Qing
RA   Garnett, Mathew J.
RA   Reddel, Roger Robert
RT   "Pan-cancer proteomic map of 949 human cell lines.";
RL   Cancer Cell 40:835-849.e8(2022).
//