ID HCC1954 AC CVCL_1259 SY HCC-1954; Hamon Cancer Center 1954 DR BTO; BTO_0005368 DR CLO; CLO_0003647 DR EFO; EFO_0001175 DR ArrayExpress; E-MTAB-38 DR ArrayExpress; E-MTAB-783 DR ArrayExpress; E-MTAB-2706 DR ArrayExpress; E-MTAB-2770 DR ArrayExpress; E-MTAB-3610 DR ArrayExpress; E-TABM-157 DR ATCC; CRL-2338 DR BCRJ; 0280 DR BioGRID_ORCS_Cell_line; 425 DR BioSample; SAMN03473018 DR BioSample; SAMN10987850 DR cancercelllines; CVCL_1259 DR Cell_Model_Passport; SIDM00872 DR ChEMBL-Cells; CHEMBL3308107 DR ChEMBL-Targets; CHEMBL1075459 DR CLS; 305268 DR Cosmic; 749709 DR Cosmic; 904369 DR Cosmic; 1136367 DR Cosmic; 1235077 DR Cosmic; 1287889 DR Cosmic; 1308993 DR Cosmic; 1430345 DR Cosmic; 1473150 DR Cosmic; 1518107 DR Cosmic; 1603208 DR Cosmic; 1717243 DR Cosmic; 1935009 DR Cosmic; 1995428 DR Cosmic; 2165007 DR Cosmic-CLP; 749709 DR DepMap; ACH-000859 DR EGA; EGAS00001000610 DR EGA; EGAS00001000978 DR GDSC; 749709 DR GEO; GSM185081 DR GEO; GSM185082 DR GEO; GSM186724 DR GEO; GSM217578 DR GEO; GSM219962 DR GEO; GSM274675 DR GEO; GSM303673 DR GEO; GSM303675 DR GEO; GSM303680 DR GEO; GSM303682 DR GEO; GSM303684 DR GEO; GSM303687 DR GEO; GSM303689 DR GEO; GSM303691 DR GEO; GSM303695 DR GEO; GSM303698 DR GEO; GSM303700 DR GEO; GSM303704 DR GEO; GSM303707 DR GEO; GSM303709 DR GEO; GSM303712 DR GEO; GSM303715 DR GEO; GSM303719 DR GEO; GSM303721 DR GEO; GSM303723 DR GEO; GSM303726 DR GEO; GSM303729 DR GEO; GSM303731 DR GEO; GSM303735 DR GEO; GSM303738 DR GEO; GSM303740 DR GEO; GSM303742 DR GEO; GSM303745 DR GEO; GSM303747 DR GEO; GSM303750 DR GEO; GSM303753 DR GEO; GSM303754 DR GEO; GSM303760 DR GEO; GSM303762 DR GEO; GSM303766 DR GEO; GSM303769 DR GEO; GSM303770 DR GEO; GSM303775 DR GEO; GSM303777 DR GEO; GSM303780 DR GEO; GSM303784 DR GEO; GSM303786 DR GEO; GSM303789 DR GEO; GSM337683 DR GEO; GSM337684 DR GEO; GSM337685 DR GEO; GSM337686 DR GEO; GSM337687 DR GEO; GSM337688 DR GEO; GSM337689 DR GEO; GSM337690 DR GEO; GSM337691 DR GEO; GSM337692 DR GEO; GSM337693 DR GEO; GSM337694 DR GEO; GSM337695 DR GEO; GSM344374 DR GEO; GSM344424 DR GEO; GSM350499 DR GEO; GSM481299 DR GEO; GSM718290 DR GEO; GSM783937 DR GEO; GSM847341 DR GEO; GSM847483 DR GEO; GSM887046 DR GEO; GSM888116 DR GEO; GSM1008901 DR GEO; GSM1053712 DR GEO; GSM1172871 DR GEO; GSM1172962 DR GEO; GSM1215272 DR GEO; GSM1374508 DR GEO; GSM1374509 DR GEO; GSM1401665 DR GEO; GSM1669852 DR GEO; GSM2258830 DR GEO; GSM2258831 DR GEO; GSM2258832 DR GEO; GSM2258833 DR GEO; GSM2258834 DR GEO; GSM2258835 DR GEO; GSM2258836 DR GEO; GSM2258837 DR GEO; GSM2258838 DR GEO; GSM2258839 DR GEO; GSM2258840 DR GEO; GSM2258841 DR GEO; GSM2258842 DR GEO; GSM2258843 DR GEO; GSM2258844 DR GEO; GSM2258845 DR GEO; GSM2258846 DR GEO; GSM2258847 DR GEO; GSM2258929 DR GEO; GSM2258930 DR GEO; GSM2258931 DR GEO; GSM3258551 DR IARC_TP53; 21363 DR IGRhCellID; HCC1954 DR KCLB; 9S1954 DR LiGeA; CCLE_705 DR LINCS_HMS; 50213 DR LINCS_LDP; LCL-1332 DR Lonza; 1357 DR PharmacoDB; HCC1954_486_2019 DR PRIDE; PXD002486 DR PRIDE; PXD005339 DR PRIDE; PXD030304 DR Progenetix; CVCL_1259 DR PubChem_Cell_line; CVCL_1259 DR SLKBase; 3543 DR Wikidata; Q54881618 RX PubMed=9833771; RX PubMed=11314036; RX PubMed=16959974; RX PubMed=17157791; RX PubMed=17932254; RX PubMed=19582160; RX PubMed=20070913; RX PubMed=20164919; RX PubMed=20215515; RX PubMed=21378333; RX PubMed=22460905; RX PubMed=22585861; RX PubMed=23151021; RX PubMed=23601657; RX PubMed=23637631; RX PubMed=24094812; RX PubMed=24162158; RX PubMed=24176112; RX PubMed=25485619; RX PubMed=25877200; RX PubMed=25960936; RX PubMed=25984343; RX PubMed=26589293; RX PubMed=27397505; RX PubMed=28196595; RX PubMed=28287265; RX PubMed=28889351; RX PubMed=29273624; RX PubMed=30894373; RX PubMed=30971826; RX PubMed=31068700; RX PubMed=31978347; RX PubMed=35839778; WW Info; LINCS; ICBP43; https://lincs.hms.harvard.edu/resources/reagents/icbp43/ WW Info; MCLP; -; https://tcpaportal.org/mclp/ WW Info; Pawefish; -; https://www.cellosaurus.org/pawefish/BreastCellLineDescriptions/HCC1954.html WW Info; Synapse; JWGray panel; https://www.synapse.org/#!Synapse:syn2346643/wiki/62255 WW Provider; Altogen; Xenograft model; https://altogenlabs.com/xenograft-models/breast-cancer-xenograft/hcc1954-xenograft-model/ WW Provider; UT Southwestern; -; https://www.utsouthwestern.edu/edumedia/edufiles/about_us/admin_offices/technology_development/available_technologies/cell-lines.pdf CC Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE). CC Part of: COSMIC cell lines project. CC Part of: ICBP43 breast cancer cell line panel. CC Part of: JWGray breast cancer cell line panel. CC Part of: KuDOS 95 cell line panel. CC Part of: MD Anderson Cell Lines Project. CC Population: East Indian. CC Doubling time: 45 hours (PubMed=25984343); 43.81 hours (JWGray panel). CC HLA typing: A*24:02,24:02; B*35:01,40:06; C*04:01,15:02; DQA1*03:02,01:02; DRB1*16:05,16:05 (PubMed=25960936). CC HLA typing: A*24:02,24:02; B*35:01,40:06; C*04:01,15:02 (PubMed=26589293). CC Microsatellite instability: Stable (MSS) (Sanger). CC Sequence variation: Gene fusion; HGNC; HGNC:2092; CLTC + HGNC; HGNC:29559; VMP1; Name(s)=CLTC-VMP1 (PubMed=23637631). CC Sequence variation: Mutation; HGNC; HGNC:8975; PIK3CA; Simple; p.His1047Arg (c.3140A>G); ClinVar=VCV000013652; Zygosity=Heterozygous (ATCC=CRL-2338). CC Sequence variation: Mutation; HGNC; HGNC:11998; TP53; Simple; p.Tyr163Cys (c.488A>G); ClinVar=VCV000127814; Zygosity=Homozygous (PubMed=28889351; ATCC=CRL-2338). CC Omics: Genomics; ChIP-seq; H2BK120ub. CC Omics: Genomics; ChIP-seq; H3K23ac. CC Omics: Genomics; ChIP-seq; H3K27ac. CC Omics: Genomics; ChIP-seq; H3K27me3. CC Omics: Genomics; ChIP-seq; H3K36me3. CC Omics: Genomics; ChIP-seq; H3K4me1. CC Omics: Genomics; ChIP-seq; H3K4me3. CC Omics: Genomics; ChIP-seq; H3K79me2. CC Omics: Genomics; ChIP-seq; H3K9ac. CC Omics: Genomics; ChIP-seq; H3K9me3. CC Omics: Genomics; ChIP-seq; H4K8ac. CC Omics: Genomics; Chromosome conformation analysis; Hi-C. CC Omics: Genomics; DNA methylation analysis. CC Omics: Genomics; Whole exome sequencing. CC Omics: Phenotyping; CRISPR screening. CC Omics: Phenotyping; Drug screening. CC Omics: Phenotyping; shRNA library screening. CC Omics: Proteomics; Expression; Reverse-phase protein array. CC Omics: Proteomics; PTM; Glycoproteome. CC Omics: Proteomics; Quantitative. CC Omics: Transcriptomics; Microarray. CC Omics: Transcriptomics; miRNA profiling; Microarray. CC Omics: Transcriptomics; RNAseq. CC Omics: Variations; Array-based CGH. CC Omics: Variations; CNV analysis. CC Omics: Variations; SNP array analysis. CC Genome ancestry: African=0.47%; Native American=0%; East Asian, North=5.83%; East Asian, South=0%; South Asian=78.3%; European, North=2.65%; European, South=12.74% (PubMed=30894373). CC Miscellaneous: Direct author submission of STR profile from Girard, Luc & Gazdar, Adi F. CC Derived from site: In situ; Breast; UBERON=UBERON_0000310. ST Source(s): ATCC=CRL-2338; Cosmic-CLP=749709; Direct_author_submission; PubMed=25877200; PubMed=28889351; Technion Genomics Center ST Amelogenin: X ST CSF1PO: 10 ST D10S1248: 14 (Direct_author_submission) ST D10S1248: 14,15 (Technion Genomics Center) ST D12S391: 22 ST D13S317: 8,9 ST D16S539: 9,11 ST D18S51: 14,18 ST D19S433: 13,15.2 ST D1S1656: 15,16 (Technion Genomics Center) ST D1S1656: 16 (Direct_author_submission) ST D21S11: 28,32.2 (ATCC=CRL-2338; PubMed=25877200; PubMed=28889351; Technion Genomics Center) ST D21S11: 32.2 (Direct_author_submission) ST D22S1045: 11,15 ST D2S1338: 17 (Direct_author_submission) ST D2S1338: 17,26 (ATCC=CRL-2338; Technion Genomics Center) ST D2S441: 10,11 ST D3S1358: 15,16 ST D5S818: 11 ST D7S820: 10,11 ST D8S1179: 12,15 ST FGA: 22,23 ST Penta D: 9,12 ST Penta E: 12,16 ST TH01: 6,7 ST TPOX: 8,9 ST vWA: 18,19 DI NCIt; C4017; Breast ductal carcinoma OX NCBI_TaxID=9606; ! Homo sapiens (Human) OI CVCL_1260 ! HCC1954 BL SX Female AG 61Y CA Cancer cell line DT Created: 04-04-12; Last updated: 14-08-25; Version: 52 CH CVCL_LG20 ! HCC1954-LR CH CVCL_4W93 ! HCC1954-Luc CH CVCL_LG21 ! HCC1954-NR CH CVCL_VR24 ! HCC1954-TGL CH CVCL_B3MM ! HCC1954/TDR // RX PubMed=24162158; DOI=10.1007/s10549-013-2743-3; PMCID=PMC3832776; RA Prat, Aleix RA Karginova, Olga RA Parker, Joel S. RA Fan, Cheng RA He, Xia-Ping RA Bixby, Lisa M. RA Harrell, J. Chuck RA Roman, Erick RA Adamo, Barbara RA Troester, Melissa A. RA Perou, Charles M. RT "Characterization of cell lines derived from breast cancers and normal RT mammary tissues for the study of the intrinsic molecular subtypes."; RL Breast Cancer Res. Treat. 142:237-255(2013). // RX PubMed=31068700; DOI=10.1038/s41586-019-1186-3; PMCID=PMC6697103; RA Ghandi, Mahmoud RA Huang, Franklin W. RA Jane-Valbuena, Judit RA Kryukov, Gregory V. RA Lo, Christopher C. RA McDonald, E. Robert 3rd RA Barretina, Jordi Ginesta RA Gelfand, Ellen T. RA Bielski, Craig M. RA Li, Hao-Xin RA Hu, Kevin RA Andreev-Drakhlin, Alexander Y. RA Kim, Jaegil RA Hess, Julian M. RA Haas, Brian J. RA Aguet, Francois RA Weir, Barbara A. RA Rothberg, Michael V. RA Paolella, Brenton R. RA Lawrence, Michael Scott RA Akbani, Rehan RA Lu, Yi-Ling RA Tiv, Hong L. RA Gokhale, Prafulla C. RA de Weck, Antoine RA Mansour, Ali Amin RA Oh, Coyin RA Shih, Juliann RA Hadi, Kevin RA Rosen, Yanay RA Bistline, Jonathan RA Venkatesan, Kavitha RA Reddy, Anupama RA Sonkin, Dmitriy RA Liu, Manway RA Lehar, Joseph RA Korn, Joshua M. RA Porter, Dale A. RA Jones, Michael D. RA Golji, Javad RA Caponigro, Giordano RA Taylor, Jordan E. RA Dunning, Caitlin M. RA Creech, Amanda L. RA Warren, Allison C. RA McFarland, James M. RA Zamanighomi, Mahdi RA Kauffmann, Audrey RA Stransky, Nicolas RA Imielinski, Marcin RA Maruvka, Yosef E. RA Cherniack, Andrew D. RA Tsherniak, Aviad RA Vazquez, Francisca RA Jaffe, Jacob D. RA Lane, Andrew Alan RA Weinstock, David M. RA Johannessen, Cory M. RA Morrissey, Michael P. RA Stegmeier, Frank RA Schlegel, Robert RA Hahn, William Chun RA Getz, Gad RA Mills, Gordon B. RA Boehm, Jesse S. RA Golub, Todd Robert RA Garraway, Levi Alexander RA Sellers, William Raj RT "Next-generation characterization of the Cancer Cell Line RT Encyclopedia."; RL Nature 569:503-508(2019). // RX PubMed=24176112; DOI=10.1186/gb-2013-14-10-r110; PMCID=PMC3937590; RA Daemen, Anneleen RA Griffith, Obi L. RA Heiser, Laura M. RA Wang, Nicholas J. RA Enache, Oana M. RA Sanborn, Zachary J. RA Pepin, Francois RA Durinck, Steffen RA Korkola, James E. RA Griffith, Malachi RA Hur, Joe S. RA Huh, Nam RA Chung, Jongsuk RA Cope, Leslie RA Fackler, Mary Jo RA Umbricht, Christopher Benedict RA Sukumar, Saraswati RA Seth, Pankaj RA Sukhatme, Vikas P. RA Jakkula, Lakshmi R. RA Lu, Yi-Ling RA Mills, Gordon B. RA Cho, Raymond J. RA Collisson, Eric A. RA van 't Veer, Laura J. RA Spellman, Paul T. RA Gray, Joe W. RT "Modeling precision treatment of breast cancer."; RL Genome Biol. 14:R110.1-R110.14(2013). // RX PubMed=35839778; DOI=10.1016/j.ccell.2022.06.010; PMCID=PMC9387775; RA Goncalves, Emanuel RA Poulos, Rebecca C. RA Cai, Zhao-Xiang RA Barthorpe, Syd RA Manda, Srikanth S. RA Lucas, Natasha RA Beck, Alexandra RA Bucio-Noble, Daniel RA Dausmann, Michael RA Hall, Caitlin RA Hecker, Michael RA Koh, Jennifer RA Lightfoot, Howard RA Mahboob, Sadia RA Mali, Iman RA Morris, James RA Richardson, Laura RA Seneviratne, Akila J. RA Shepherd, Rebecca RA Sykes, Erin RA Thomas, Frances RA Valentini, Sara RA Williams, Steven G. RA Wu, Yang-Xiu RA Xavier, Dylan RA MacKenzie, Karen L. RA Hains, Peter G. RA Tully, Brett RA Robinson, Phillip James RA Zhong, Qing RA Garnett, Mathew J. RA Reddel, Roger Robert RT "Pan-cancer proteomic map of 949 human cell lines."; RL Cancer Cell 40:835-849.e8(2022). // RX PubMed=26589293; DOI=10.1186/s13073-015-0240-5; PMCID=PMC4653878; RA Scholtalbers, Jelle RA Boegel, Sebastian RA Bukur, Thomas RA Byl, Marius RA Goerges, Sebastian RA Sorn, Patrick RA Loewer, Martin RA Sahin, Ugur RA Castle, John C. RT "TCLP: an online cancer cell line catalogue integrating HLA type, RT predicted neo-epitopes, virus and gene expression."; RL Genome Med. 7:118.1-118.7(2015). // RX PubMed=23151021; DOI=10.1186/1471-2164-13-619; PMCID=PMC3546428; RA Grigoriadis, Anita RA Mackay, Alan RA Noel, Elodie RA Wu, Pei-Jun RA Natrajan, Rachael RA Frankum, Jessica RA Reis-Filho, Jorge Sergio RA Tutt, Andrew N.J. RT "Molecular characterisation of cell line models for triple-negative RT breast cancers."; RL BMC Genomics 13:619.1-619.14(2012). // RX PubMed=28889351; DOI=10.1007/s10549-017-4496-x; RA Saunus, Jodi M. RA Smart, Chanel E. RA Kutasovic, Jamie R. RA Johnston, Rebecca L. RA Kalita-de Croft, Priyakshi RA Miranda, Mariska RA Rozali, Esdy N. RA Vargas, Ana Cristina RA Reid, Lynne E. RA Lorsy, Eva RA Cocciardi, Sibylle RA Seidens, Tatjana RA McCart Reed, Amy Ellen RA Dalley, Andrew J. RA Wockner, Leesa F. RA Johnson, Julie RA Sarkar, Debina RA Askarian-Amiri, Marjan E. RA Simpson, Peter T. RA Khanna, Kum Kum RA Chenevix-Trench, Georgia RA Al-Ejeh, Fares RA Lakhani, Sunil R. RT "Multidimensional phenotyping of breast cancer cell lines to guide RT preclinical research."; RL Breast Cancer Res. Treat. 167:289-301(2018). // RX PubMed=30971826; DOI=10.1038/s41586-019-1103-9; RA Behan, Fiona M. RA Iorio, Francesco RA Picco, Gabriele RA Goncalves, Emanuel RA Beaver, Charlotte M. RA Migliardi, Giorgia RA Santos, Rita RA Rao, Yanhua RA Sassi, Francesco RA Pinnelli, Marika RA Ansari, Rizwan RA Harper, Sarah RA Jackson, David Adam RA McRae, Rebecca RA Pooley, Rachel RA Wilkinson, Piers RA van der Meer, Dieudonne J. RA Dow, David RA Buser-Doepner, Carolyn A. RA Bertotti, Andrea RA Trusolino, Livio RA Stronach, Euan Alexander RA Saez-Rodriguez, Julio RA Yusa, Kosuke RA Garnett, Mathew J. RT "Prioritization of cancer therapeutic targets using CRISPR-Cas9 RT screens."; RL Nature 568:511-516(2019). // RX PubMed=11314036; DOI=10.1038/sj.onc.1204211; RA Forgacs, Eva RA Wren, Jonathan D. RA Kamibayashi, Craig RA Kondo, Masashi RA Xu, Xie L. RA Markowitz, Sanford David RA Tomlinson, Gail E. RA Muller, Carolyn Y. RA Gazdar, Adi F. RA Garner, Harold Ray RA Minna, John D. RT "Searching for microsatellite mutations in coding regions in lung, RT breast, ovarian and colorectal cancers."; RL Oncogene 20:1005-1009(2001). // RX PubMed=20070913; DOI=10.1186/1471-2407-10-15; PMCID=PMC2836299; RA Tsuji, Katumi RA Kawauchi, Shigeto RA Saito, Soichiro RA Furuya, Tomoko RA Ikemoto, Kenzo RA Nakao, Motonao RA Yamamoto, Shigeru RA Oka, Masaaki RA Hirano, Takashi RA Sasaki, Kohsuke RT "Breast cancer cell lines carry cell line-specific genomic alterations RT that are distinct from aberrations in breast cancer tissues: RT comparison of the CGH profiles between cancer cell lines and primary RT cancer tissues."; RL BMC Cancer 10:15.1-15.10(2010). // RX PubMed=16959974; DOI=10.1126/science.1133427; RA Sjoblom, Tobias RA Jones, Sian RA Wood, Laura DeLong RA Parsons, D. Williams RA Lin, Jimmy RA Barber, Thomas D. RA Mandelker, Diana RA Leary, Rebecca J. RA Ptak, Janine RA Silliman, Natalie RA Szabo, Steve RA Buckhaults, Phillip RA Farrell, Christopher RA Meeh, Paul RA Markowitz, Sanford David RA Willis, Joseph E. RA Dawson, Dawn RA Willson, James K.V. RA Gazdar, Adi F. RA Hartigan, James RA Wu, Leo RA Liu, Chang-Sheng RA Parmigiani, Giovanni RA Park, Ben Ho RA Bachman, Kurtis E. RA Papadopoulos, Nickolas RA Vogelstein, Bert RA Kinzler, Kenneth Wayne RA Velculescu, Victor E. RT "The consensus coding sequences of human breast and colorectal RT cancers."; RL Science 314:268-274(2006). // RX PubMed=25877200; DOI=10.1038/nature14397; RA Yu, Ma-Mie RA Selvaraj, Suresh K. RA Liang-Chu, May M.Y. RA Aghajani, Sahar RA Busse, Matthew RA Yuan, Jean RA Lee, Genee RA Peale, Franklin V. RA Klijn, Christiaan RA Bourgon, Richard RA Kaminker, Joshua S. RA Neve, Richard M. RT "A resource for cell line authentication, annotation and quality RT control."; RL Nature 520:307-311(2015). // RX PubMed=23637631; DOI=10.1371/journal.pgen.1003464; PMCID=PMC3636093; RA Giacomini, Craig P. RA Sun, Steven RA Varma, Sushama RA Shain, Alan Hunter RA Giacomini, Marilyn M. RA Balagtas, Jay Michael S. RA Sweeney, Robert T. RA Lai, Everett RA Del Vecchio, Catherine A. RA Forster, Andrew D. RA Clarke, Nicole RA Montgomery, Kelli D. RA Zhu, Shirley RA Wong, Albert J. RA van de Rijn, Matt RA West, Robert B. RA Pollack, Jonathan R. RT "Breakpoint analysis of transcriptional and genomic profiles uncovers RT novel gene fusions spanning multiple human cancer types."; RL PLoS Genet. 9:e1003464.1-e1003464.19(2013). // RX PubMed=28196595; DOI=10.1016/j.ccell.2017.01.005; PMCID=PMC5501076; RA Li, Jun RA Zhao, Wei RA Akbani, Rehan RA Liu, Wen-Bin RA Ju, Zhen-Lin RA Ling, Shi-Yun RA Vellano, Christopher P. RA Roebuck, Paul RA Yu, Qing-Hua RA Eterovic, Agda Karina RA Byers, Lauren Averett RA Davies, Michael A. RA Deng, Wan-Leng RA Gopal, Y.N. Vashisht RA Chen, Guo RA von Euw, Erika Maria RA Slamon, Dennis Joseph RA Conklin, Dylan RA Heymach, John Victor RA Gazdar, Adi F. RA Minna, John D. RA Myers, Jeffrey N. RA Lu, Yi-Ling RA Mills, Gordon B. RA Liang, Han RT "Characterization of human cancer cell lines by reverse-phase protein RT arrays."; RL Cancer Cell 31:225-239(2017). // RX PubMed=9833771; DOI=10.1002/(SICI)1097-0215(19981209)78:6<766::AID-IJC15>3.0.CO;2-L; RA Gazdar, Adi F. RA Kurvari, Venkatesh RA Virmani, Arvind K. RA Gollahon, Lauren S. RA Sakaguchi, Masahiro RA Westerfield, Max RA Kodagoda, Dulmini R. RA Stasny, Victor RA Cunningham, H. Thomas RA Wistuba, Ignacio Ivan RA Tomlinson, Gail E. RA Tonk, Vijay RA Ashfaq, Raheela RA Leitch, A. Marilyn RA Minna, John D. RA Shay, Jerry W. RT "Characterization of paired tumor and non-tumor cell lines established RT from patients with breast cancer."; RL Int. J. Cancer 78:766-774(1998). // RX PubMed=31978347; DOI=10.1016/j.cell.2019.12.023; PMCID=PMC7339254; RA Nusinow, David Paul RA Szpyt, John RA Ghandi, Mahmoud RA Rose, Christopher M. RA McDonald, E. Robert 3rd RA Kalocsay, Marian RA Jane-Valbuena, Judit RA Gelfand, Ellen T. RA Schweppe, Devin Karl RA Jedrychowski, Mark P. RA Golji, Javad RA Porter, Dale A. RA Rejtar, Tomas RA Wang, Y. Karen RA Kryukov, Gregory V. RA Stegmeier, Frank RA Erickson, Brian K. RA Garraway, Levi Alexander RA Sellers, William Raj RA Gygi, Steven P. RT "Quantitative proteomics of the Cancer Cell Line Encyclopedia."; RL Cell 180:387-402.e16(2020). // RX PubMed=28287265; DOI=10.1021/acs.jproteome.6b00470; PMCID=PMC5557415; RA Yen, Ten-Yang RA Bowen, Spencer RA Yen, Roger RA Piryatinska, Alexandra RA Macher, Bruce A. RA Timpe, Leslie C. RT "Glycoproteins in claudin-low breast cancer cell lines have a unique RT expression profile."; RL J. Proteome Res. 16:1391-1400(2017). // RX PubMed=17932254; DOI=10.1126/science.1145720; RA Wood, Laura DeLong RA Parsons, D. Williams RA Jones, Sian RA Lin, Jimmy RA Sjoblom, Tobias RA Leary, Rebecca J. RA Shen, Dong RA Boca, Simina Maria RA Barber, Thomas D. RA Ptak, Janine RA Silliman, Natalie RA Szabo, Steve RA Dezso, Zoltan RA Ustyanksky, Vadim RA Nikolskaya, Tatiana RA Nikolsky, Yuri RA Karchin, Rachel RA Wilson, Paul A. RA Kaminker, Joshua S. RA Zhang, Ze-Min RA Croshaw, Randal RA Willis, Joseph E. RA Dawson, Dawn RA Shipitsin, Michail RA Willson, James K.V. RA Sukumar, Saraswati RA Polyak, Kornelia RA Park, Ben Ho RA Pethiyagoda, Charit L. RA Pant, P.V. Krishna RA Ballinger, Dennis G. RA Sparks, Andrew B. RA Hartigan, James RA Smith, Douglas R. RA Suh, Erick RA Papadopoulos, Nickolas RA Buckhaults, Phillip RA Markowitz, Sanford David RA Parmigiani, Giovanni RA Kinzler, Kenneth Wayne RA Velculescu, Victor E. RA Vogelstein, Bert RT "The genomic landscapes of human breast and colorectal cancers."; RL Science 318:1108-1113(2007). // RX PubMed=24094812; DOI=10.1016/j.ccr.2013.08.020; PMCID=PMC3931310; RA Timmerman, Luika A. RA Holton, Thomas RA Yuneva, Mariia RA Louie, Raymond J. RA Padro, Merce RA Daemen, Anneleen RA Hu, Min RA Chan, Denise A. RA Ethier, Stephen P. RA van 't Veer, Laura J. RA Polyak, Kornelia RA McCormick, Frank RA Gray, Joe W. RT "Glutamine sensitivity analysis identifies the xCT antiporter as a RT common triple-negative breast tumor therapeutic target."; RL Cancer Cell 24:450-465(2013). // RX PubMed=25485619; DOI=10.1038/nbt.3080; RA Klijn, Christiaan RA Durinck, Steffen RA Stawiski, Eric W. RA Haverty, Peter M. RA Jiang, Zhao-Shi RA Liu, Han-Bin RA Degenhardt, Jeremiah RA Mayba, Oleg RA Gnad, Florian RA Liu, Jin-Feng RA Pau, Gregoire RA Reeder, Jens RA Cao, Yi RA Mukhyala, Kiran RA Selvaraj, Suresh K. RA Yu, Ma-Mie RA Zynda, Gregory J. RA Brauer, Matthew J. RA Wu, Thomas D. RA Gentleman, Robert Clifford RA Manning, Gerard RA Yauch, Robert L. RA Bourgon, Richard RA Stokoe, David RA Modrusan, Zora RA Neve, Richard M. RA de Sauvage, Frederic J. RA Settleman, Jeffrey RA Seshagiri, Somasekar RA Zhang, Ze-Min RT "A comprehensive transcriptional portrait of human cancer cell RT lines."; RL Nat. Biotechnol. 33:306-312(2015). // RX PubMed=17157791; DOI=10.1016/j.ccr.2006.10.008; PMCID=PMC2730521; RA Neve, Richard M. RA Chin, Koei RA Fridlyand, Jane RA Yeh, Jennifer RA Baehner, Frederick L. RA Fevr, Tea RA Clark, Laura RA Bayani, Nora RA Coppe, Jean-Philippe RA Tong, Frances RA Speed, Terry RA Spellman, Paul T. RA DeVries, Sandy RA Lapuk, Anna RA Wang, Nick J. RA Kuo, Wen-Lin RA Stilwell, Jackie L. RA Pinkel, Daniel RA Albertson, Donna G. RA Waldman, Frederic M. RA McCormick, Frank RA Dickson, Robert Brent RA Johnson, Michael D. RA Lippman, Marc E. RA Ethier, Stephen P. RA Gazdar, Adi F. RA Gray, Joe W. RT "A collection of breast cancer cell lines for the study of RT functionally distinct cancer subtypes."; RL Cancer Cell 10:515-527(2006). // RX PubMed=20164919; DOI=10.1038/nature08768; PMCID=PMC3145113; RA Bignell, Graham Robert RA Greenman, Christopher D. RA Davies, Helen R. RA Butler, Adam P. RA Edkins, Sarah RA Andrews, Jenny M. RA Buck, Gemma RA Chen, Lina RA Beare, David RA Latimer, Calli RA Widaa, Sara RA Hinton, Jonathan RA Fahey, Ciara RA Fu, Bei-Yuan RA Swamy, Sajani RA Dalgliesh, Gillian L. RA Teh, Bin Tean RA Deloukas, Panos RA Yang, Feng-Tang RA Campbell, Peter J. RA Futreal, P. Andrew RA Stratton, Michael Rudolf RT "Signatures of mutation and selection in the cancer genome."; RL Nature 463:893-898(2010). // RX PubMed=29273624; DOI=10.1101/gr.226019.117; PMCID=PMC5793780; RA Franco, Hector L. RA Nagari, Anusha RA Malladi, Venkat S. RA Li, Wen-Qian RA Xi, Yuan-Xin RA Richardson, Dana RA Allton, Kendra L. RA Tanaka, Kaori RA Li, Jing RA Murakami, Shino RA Keyomarsi, Khandan RA Bedford, Mark T. RA Shi, Xiao-Bing RA Li, Wei RA Barton, Michelle Craig RA Dent, Sharon Yoder Roth RA Kraus, W. Lee RT "Enhancer transcription reveals subtype-specific gene expression RT programs controlling breast cancer pathogenesis."; RL Genome Res. 28:159-170(2018). // RX PubMed=25984343; DOI=10.1038/sdata.2014.35; PMCID=PMC4432652; RA Cowley, Glenn S. RA Weir, Barbara A. RA Vazquez, Francisca RA Tamayo, Pablo RA Scott, Justine A. RA Rusin, Scott RA East-Seletsky, Alexandra RA Ali, Levi D. RA Gerath, William F.J. RA Pantel, Sarah E. RA Lizotte, Patrick Hall RA Jiang, Guo-Zhi RA Hsiao, Jessica RA Tsherniak, Aviad RA Dwinell, Elizabeth RA Aoyama, Simon RA Okamoto, Michael RA Harrington, William RA Gelfand, Ellen T. RA Green, Thomas M. RA Tomko, Mark J. RA Gopal, Shuba RA Wong, Terence C. RA Li, Hu-Bo RA Howell, Sara RA Stransky, Nicolas RA Liefeld, Ted RA Jang, Dongkeun RA Bistline, Jonathan RA Meyers, Barbara Hill RA Armstrong, Scott Allen RA Anderson, Kenneth Carl RA Stegmaier, Kimberly RA Reich, Michael RA Pellman, David RA Boehm, Jesse S. RA Mesirov, Jill P. RA Golub, Todd Robert RA Root, David E. RA Hahn, William Chun RT "Parallel genome-scale loss of function screens in 216 cancer cell RT lines for the identification of context-specific genetic RT dependencies."; RL Sci. Data 1:140035.1-140035.12(2014). // RX PubMed=22585861; DOI=10.1158/2159-8290.CD-11-0224; PMCID=PMC5057396; RA Marcotte, Richard RA Brown, Kevin R. RA Suarez Saiz, Fernando Jose RA Sayad, Azin RA Karamboulas, Konstantina RA Krzyzanowski, Paul M. RA Sircoulomb, Fabrice RA Medrano, Mauricio RA Fedyshyn, Yaroslav RA Koh, Judice Lie-Yong RA van Dyk, Dewald RA Fedyshyn, Bohdana RA Luhova, Marianna RA Brito, Glauber C. RA Vizeacoumar, Franco J. RA Vizeacoumar, Frederick S. RA Datti, Alessandro RA Kasimer, Dahlia RA Buzina, Alla RA Mero, Patricia RA Misquitta, Christine RA Normand, Josee RA Haider, Maliha RA Ketela, Troy RA Wrana, Jeffrey L. RA Rottapel, Robert RA Neel, Benjamin G. RA Moffat, Jason RT "Essential gene profiles in breast, pancreatic, and ovarian cancer RT cells."; RL Cancer Discov. 2:172-189(2012). // RX PubMed=23601657; DOI=10.1186/bcr3415; PMCID=PMC3672661; RA Riaz, Muhammad RA van Jaarsveld, Marijn T.M. RA Hollestelle, Antoinette RA Prager-van der Smissen, Wendy J.C. RA Heine, Anouk A.J. RA Boersma, Antonius W.M. RA Liu, Jing-Jing RA Helmijr, Jean C.A. RA Ozturk, Bahar RA Smid, Marcel RA Wiemer, Erik A.C. RA Foekens, John A. RA Martens, John W.M. RT "miRNA expression profiling of 51 human breast cancer cell lines RT reveals subtype and driver mutation-specific miRNAs."; RL Breast Cancer Res. 15:R33.1-R33.17(2013). // RX PubMed=19582160; DOI=10.1371/journal.pone.0006146; PMCID=PMC2702084; RA Kao, Jessica RA Salari, Keyan RA Bocanegra, Melanie RA Choi, Yoon-La RA Girard, Luc RA Gandhi, Jeet RA Kwei, Kevin A. RA Hernandez-Boussard, Tina RA Wang, Pei RA Gazdar, Adi F. RA Minna, John D. RA Pollack, Jonathan R. RT "Molecular profiling of breast cancer cell lines defines relevant RT tumor models and provides a resource for cancer gene discovery."; RL PLoS ONE 4:e6146.1-e6146.16(2009). // RX PubMed=22460905; DOI=10.1038/nature11003; PMCID=PMC3320027; RA Barretina, Jordi Ginesta RA Caponigro, Giordano RA Stransky, Nicolas RA Venkatesan, Kavitha RA Margolin, Adam A. RA Kim, Sungjoon RA Wilson, Christopher J. RA Lehar, Joseph RA Kryukov, Gregory V. RA Sonkin, Dmitriy RA Reddy, Anupama RA Liu, Manway RA Murray, Lauren RA Berger, Michael F. RA Monahan, John E. RA Morais, Paula RA Meltzer, Jodi RA Korejwa, Adam RA Jane-Valbuena, Judit RA Mapa, Felipa A. RA Thibault, Joseph RA Bric-Furlong, Eva RA Raman, Pichai RA Shipway, Aaron RA Engels, Ingo H. RA Cheng, Jill RA Yu, Guo-Ying K. RA Yu, Jian-Jun RA Aspesi, Peter Jr. RA de Silva, Melanie RA Jagtap, Kalpana RA Jones, Michael D. RA Wang, Li RA Hatton, Charles RA Palescandolo, Emanuele RA Gupta, Supriya RA Mahan, Scott RA Sougnez, Carrie RA Onofrio, Robert C. RA Liefeld, Ted RA MacConaill, Laura Eleanor RA Winckler, Wendy RA Reich, Michael RA Li, Nan-Xin RA Mesirov, Jill P. RA Gabriel, Stacey B. RA Getz, Gad RA Ardlie, Kristin RA Chan, Vivien RA Myer, Vic E. RA Weber, Barbara L. RA Porter, Jeff RA Warmuth, Markus RA Finan, Peter RA Harris, Jennifer L. RA Meyerson, Matthew Langer RA Golub, Todd Robert RA Morrissey, Michael P. RA Sellers, William Raj RA Schlegel, Robert RA Garraway, Levi Alexander RT "The Cancer Cell Line Encyclopedia enables predictive modelling of RT anticancer drug sensitivity."; RL Nature 483:603-607(2012). // RX PubMed=27397505; DOI=10.1016/j.cell.2016.06.017; PMCID=PMC4967469; RA Iorio, Francesco RA Knijnenburg, Theo A. RA Vis, Daniel J. RA Bignell, Graham Robert RA Menden, Michael Patrick RA Schubert, Michael RA Aben, Nanne RA Goncalves, Emanuel RA Barthorpe, Syd RA Lightfoot, Howard RA Cokelaer, Thomas RA Greninger, Patricia RA van Dyk, Ewald RA Chang, Han RA de Silva, Heshani RA Heyn, Holger RA Deng, Xian-Ming RA Egan, Regina K. RA Liu, Qing-Song RA Mironenko, Tatiana RA Mitropoulos, Xeni RA Richardson, Laura RA Wang, Jin-Hua RA Zhang, Ting-Hu RA Moran, Sebastian RA Sayols, Sergi RA Soleimani, Maryam RA Tamborero, David RA Lopez-Bigas, Nuria RA Ross-Macdonald, Petra RA Esteller, Manel RA Gray, Nathanael S. RA Haber, Daniel Arie RA Stratton, Michael Rudolf RA Benes, Cyril Henri RA Wessels, Lodewyk F.A. RA Saez-Rodriguez, Julio RA McDermott, Ultan RA Garnett, Mathew J. RT "A landscape of pharmacogenomic interactions in cancer."; RL Cell 166:740-754(2016). // RX PubMed=25960936; DOI=10.4161/21624011.2014.954893; PMCID=PMC4355981; RA Boegel, Sebastian RA Lower, Martin RA Bukur, Thomas RA Sahin, Ugur RA Castle, John C. RT "A catalog of HLA type, HLA expression, and neo-epitope candidates in RT human cancer cell lines."; RL OncoImmunology 3:e954893.1-e954893.12(2014). // RX PubMed=30894373; DOI=10.1158/0008-5472.CAN-18-2747; PMCID=PMC6445675; RA Dutil, Julie RA Chen, Zhi-Hua RA Monteiro, Alvaro N.A. RA Teer, Jamie K. RA Eschrich, Steven A. RT "An interactive resource to probe genetic diversity and estimated RT ancestry in cancer cell lines."; RL Cancer Res. 79:1263-1273(2019). // RX PubMed=20215515; DOI=10.1158/0008-5472.CAN-09-3458; PMCID=PMC2881662; RA Rothenberg, S. Michael RA Mohapatra, Gayatry RA Rivera, Miguel N. RA Winokur, Daniel RA Greninger, Patricia RA Nitta, Mai RA Sadow, Peter M. RA Sooriyakumar, Gaya RA Brannigan, Brian W. RA Ulman, Matthew J. RA Perera, Rushika M. RA Wang, Rui RA Tam, Angela RA Ma, Xiao-Jun RA Erlander, Mark RA Sgroi, Dennis C. RA Rocco, James W. RA Lingen, Mark W. RA Cohen, Ezra E.W. RA Louis, David Neil RA Settleman, Jeffrey RA Haber, Daniel Arie RT "A genome-wide screen for microdeletions reveals disruption of RT polarity complex genes in diverse human cancers."; RL Cancer Res. 70:2158-2164(2010). // RX PubMed=21378333; RA Ford, Christopher H.J. RA Al-Bader, Maie RA Al-Ayadhi, Bushra RA Francis, Issam RT "Reassessment of estrogen receptor expression in human breast cancer RT cell lines."; RL Anticancer Res. 31:521-527(2011). //