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Cellosaurus Mm 173-02 (CVCL_IZ87)

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Cell line name Mm 173-02
Synonyms Mm173-2002; 173-2002
Accession CVCL_IZ87
Resource Identification Initiative To cite this cell line use: Mm 173-02 (RRID:CVCL_IZ87)
Comments Group: Non-human primate cell line.
From: New England Primate Research Center (NEPRC), Harvard Medical School; Boston; USA.
Transformant: NCBI_TaxID; 106332; Papiine herpesvirus 1 (Herpesvirus papio).
Omics: CTCF ChIP-seq epigenome analysis.
Omics: H3K27ac ChIP-seq epigenome analysis.
Omics: H3K27me3 ChIP-seq epigenome analysis.
Omics: H3K4me1 ChIP-seq epigenome analysis.
Omics: H3K4me3 ChIP-seq epigenome analysis.
Omics: YY1 ChIP-seq epigenome analysis.
Omics: Transcriptome analysis by RNAseq.
Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178.
Species of origin Macaca mulatta (Rhesus macaque) (NCBI Taxonomy: 9544)
Sex of cell Female
Category Transformed cell line
Publications

PubMed=22797897; DOI=10.1073/pnas.1205199109; PMCID=PMC3411951
Iskow R.C., Gokcumen O., Abyzov A., Malukiewicz J., Zhu Q.-H., Sukumar A.T., Pai A.A., Mills R.E., Habegger L., Cusanovich D.A., Rubel M.A., Perry G.H., Gerstein M.B., Stone A.C., Gilad Y., Lee C.
Regulatory element copy number differences shape primate expression profiles.
Proc. Natl. Acad. Sci. U.S.A. 109:12656-12661(2012)

PubMed=24380390; DOI=10.1186/gb-2013-14-12-r148; PMCID=PMC4056453
Schwalie P.C., Ward M.C., Cain C.E., Faure A.J., Gilad Y., Odom D.T., Flicek P.
Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes.
Genome Biol. 14:R148.1-R148.15(2013)

PubMed=25468404; DOI=10.1186/s13059-014-0547-3; PMCID=PMC4290387
Zhou X., Cain C.E., Myrthil M., Lewellen N., Michelini K., Davenport E.R., Stephens M., Pritchard J.K., Gilad Y.
Epigenetic modifications are associated with inter-species gene expression variation in primates.
Genome Biol. 15:547.1-547.19(2014)

Cross-references
Encyclopedic resources Wikidata; Q54905988
Gene expression databases ArrayExpress; E-MTAB-1511
GEO; GSM945685
GEO; GSM1468908
GEO; GSM1468916
GEO; GSM1468924
GEO; GSM1468931
GEO; GSM1468939
GEO; GSM1468947
Entry history
Entry creation15-May-2017
Last entry update30-Jan-2024
Version number8