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Cellosaurus Yamato-SS (CVCL_6C44)

[Text version]
Cell line name Yamato-SS
Synonyms YAMATO; Yamato
Accession CVCL_6C44
Resource Identification Initiative To cite this cell line use: Yamato-SS (RRID:CVCL_6C44)
Comments Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE).
Population: Japanese.
Omics: Deep exome analysis.
Omics: Transcriptome analysis by RNAseq.
Derived from site: Metastatic; Lung; UBERON=UBERON_0002048.
Sequence variations
  • Gene fusion; HGNC; 11340; SS18 + HGNC; 11335; SSX1; Name(s)=SS18-SSX1 (PubMed=20518020; DepMap=ACH-001277).
  • Mutation; HGNC; 11998; TP53; Simple; p.Arg273Cys (c.817C>T); ClinVar=VCV000043594; Zygosity=Homozygous (DepMap=ACH-001277).
Disease Biphasic synovial sarcoma (NCIt: C4279)
Synovial sarcoma (ORDO: Orphanet_3273)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Male
Age at sampling 30Y
Category Cancer cell line
Publications

PubMed=20518020; DOI=10.1002/stem.452
Naka N., Takenaka S., Araki N., Miwa T., Hashimoto N., Yoshioka K., Joyama S., Hamada K.-i., Tsukamoto Y., Tomita Y., Ueda T., Yoshikawa H., Itoh K.
Synovial sarcoma is a stem cell malignancy.
Stem Cells 28:1119-1131(2010)

Cross-references
Cell line collections (Providers) RCB; RCB3577
Cell line databases/resources cancercelllines; CVCL_6C44
Cell_Model_Passport; SIDM01410
DepMap; ACH-001277
Chemistry resources PharmacoDB; YAMATO_1678_2019
Encyclopedic resources Wikidata; Q54995208
Experimental variables resources EFO; EFO_0022538
Gene expression databases GEO; GSM2887616
GEO; GSM2887617
Entry history
Entry creation23-Feb-2016
Last entry update10-Sep-2024
Version number18