Cellosaurus SNU-407 (CVCL_5058)
Cell line name | SNU-407 | ||||||||||||||||||||||||
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Synonyms | SNU407; NCI-SNU-407 | ||||||||||||||||||||||||
Accession | CVCL_5058 | ||||||||||||||||||||||||
Resource Identification Initiative | To cite this cell line use: SNU-407 (RRID:CVCL_5058) | ||||||||||||||||||||||||
Comments | Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE). Part of: COSMIC cell lines project. Part of: NCI RAS program mutant KRAS cell line panel. Part of: Seoul National University (SNU) cell line collection. Population: Korean. Doubling time: 42 hours (PubMed=10362137). Microsatellite instability: Instable (MSI-high) (PubMed=10674020; PubMed=25926053; PubMed=31068700; Sanger). Omics: Deep exome analysis. Omics: Deep quantitative phosphoproteome analysis. Omics: Deep quantitative proteome analysis. Omics: DNA methylation analysis. Omics: SNP array analysis. Omics: Transcriptome analysis by microarray. Omics: Transcriptome analysis by RNAseq. Derived from site: Metastatic; Buttock; UBERON=UBERON_0013691. | ||||||||||||||||||||||||
Sequence variations |
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Genome ancestry | Source: PubMed=30894373
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Disease | Colon adenocarcinoma (NCIt: C4349) | ||||||||||||||||||||||||
Species of origin | Homo sapiens (Human) (NCBI Taxonomy: 9606) | ||||||||||||||||||||||||
Sex of cell | Male | ||||||||||||||||||||||||
Age at sampling | 37Y | ||||||||||||||||||||||||
Category | Cancer cell line | ||||||||||||||||||||||||
STR profile | Source(s): AddexBio=C0009016/377; Cosmic-CLP=1660034; KCLB=00407; PubMed=25926053 Markers:
Run an STR similarity search on this cell line | ||||||||||||||||||||||||
Publications | PubMed=10362137; DOI=10.1002/(SICI)1097-0215(19990611)81:6<902::AID-IJC11>3.0.CO;2-T PubMed=10674020; DOI=10.1016/S0959-8049(99)00206-3 PubMed=19956504; DOI=10.4143/crt.2005.37.1.1; PMCID=PMC2785416 PubMed=22460905; DOI=10.1038/nature11003; PMCID=PMC3320027 PubMed=25926053; DOI=10.1038/ncomms8002 PubMed=27397505; DOI=10.1016/j.cell.2016.06.017; PMCID=PMC4967469 PubMed=28854368; DOI=10.1016/j.celrep.2017.08.010; PMCID=PMC5583477 PubMed=29444439; DOI=10.1016/j.celrep.2018.01.051; PMCID=PMC6343826 PubMed=30894373; DOI=10.1158/0008-5472.CAN-18-2747; PMCID=PMC6445675 PubMed=31068700; DOI=10.1038/s41586-019-1186-3; PMCID=PMC6697103 PubMed=35839778; DOI=10.1016/j.ccell.2022.06.010; PMCID=PMC9387775 | ||||||||||||||||||||||||
Cross-references | |||||||||||||||||||||||||
Cell line collections (Providers) | AddexBio; C0009016/377
KCLB; 00407 | ||||||||||||||||||||||||
Cell line databases/resources | cancercelllines; CVCL_5058
Cell_Model_Passport; SIDM00214 ColonAtlas; SNU407 Cosmic-CLP; 1660034 DepMap; ACH-000955 | ||||||||||||||||||||||||
Biological sample resources | BioSample; SAMN10988068 | ||||||||||||||||||||||||
Chemistry resources | GDSC; 1660034
PharmacoDB; SNU407_1459_2019 PubChem_Cell_line; CVCL_5058 | ||||||||||||||||||||||||
Encyclopedic resources | Wikidata; Q54955187 | ||||||||||||||||||||||||
Gene expression databases | ArrayExpress; E-MTAB-2770
ArrayExpress; E-MTAB-3610 GEO; GSM887624 GEO; GSM888709 GEO; GSM1448217 GEO; GSM1670469 | ||||||||||||||||||||||||
Polymorphism and mutation databases | Cosmic; 738863
Cosmic; 848827 Cosmic; 875422 Cosmic; 2612377 Cosmic; 2651854 IARC_TP53; 30165 LiGeA; CCLE_766 Progenetix; CVCL_5058 | ||||||||||||||||||||||||
Proteomic databases | PRIDE; PXD005235
PRIDE; PXD030304 | ||||||||||||||||||||||||
Sequence databases | EGA; EGAS00001000978 | ||||||||||||||||||||||||
Entry history | |||||||||||||||||||||||||
Entry creation | 04-Apr-2012 | ||||||||||||||||||||||||
Last entry update | 02-May-2024 | ||||||||||||||||||||||||
Version number | 34 |