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Cellosaurus SW13 (CVCL_0542)

[Text version]
Cell line name SW13
Synonyms SW-13; SW 13; Scott and White No. 13
Accession CVCL_0542
Resource Identification Initiative To cite this cell line use: SW13 (RRID:CVCL_0542)
Comments Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE).
Part of: COSMIC cell lines project.
From: Scott and White Clinic; Temple; USA.
Population: Caucasian.
Microsatellite instability: Stable (MSS) (Sanger).
Omics: Deep exome analysis.
Omics: Deep quantitative proteome analysis.
Omics: DNA methylation analysis.
Omics: SNP array analysis.
Omics: Transcriptome analysis by microarray.
Derived from site: In situ; Adrenal gland; UBERON=UBERON_0002369.
Sequence variations
  • Mutation; HGNC; 11100; SMARCA4; Simple; p.Gln164Ter (c.490C>T); ClinVar=VCV001436624; Zygosity=Heterozygous (Cosmic-CLP=909744; DepMap=ACH-001401).
  • Mutation; HGNC; 11998; TP53; Simple; p.His193Tyr (c.577C>T); ClinVar=VCV000230256; Zygosity=Homozygous (ATCC=CCL-105; Cosmic-CLP=909744; DepMap=ACH-001401).
Genome ancestry Source: PubMed=30894373

Origin% genome
African2.01
Native American0
East Asian, North0
East Asian, South0.61
South Asian0.44
European, North72.28
European, South24.66
Disease Adrenal cortex carcinoma (NCIt: C9325)
Adrenocortical carcinoma (ORDO: Orphanet_1501)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Hierarchy Children:
CVCL_WY51 (SW13/cl.1 vim+)CVCL_WY52 (SW13/cl.2 vim-)
Sex of cell Female
Age at sampling 55Y
Category Cancer cell line
STR profile Source(s): ATCC=CCL-105; CCRID; CLS=300349; Cosmic-CLP=909744; DepMap=ACH-001401; ECACC=87031801; IZSLER=BS TCL 62; JCRB=JCRB9069; KCLB=10105

Markers:
AmelogeninX
CSF1PO11,12 (ATCC=CCL-105; Cosmic-CLP=909744; DepMap=ACH-001401; KCLB=10105)
12 (CCRID; CLS=300349; ECACC=87031801; IZSLER=BS TCL 62; JCRB=JCRB9069)
D2S133819,20
D3S135816
D5S81811,12 (CCRID; CLS=300349; DepMap=ACH-001401; IZSLER=BS TCL 62; JCRB=JCRB9069; KCLB=10105)
12 (ATCC=CCL-105; Cosmic-CLP=909744; ECACC=87031801)
D7S8208,10
D8S117910
D13S3179
D16S53912
D18S5117
D19S43314,15
D21S1131,32.2
FGA20
Penta D10,13
Penta E7,15
TH017 (JCRB=JCRB9069)
7,8 (ATCC=CCL-105; CCRID; CLS=300349; Cosmic-CLP=909744; DepMap=ACH-001401; ECACC=87031801; IZSLER=BS TCL 62; KCLB=10105)
TPOX8
vWA17,19

Run an STR similarity search on this cell line
Web pages http://www.cells-talk.com/index.php/page/copelibrary?key=SW-13
https://www.thermofisher.com/ch/en/home/technical-resources/cell-lines/s/cell-lines-detail-332.html
Publications

CLPUB00337
Leibovitz A., McCombs W.B. 3rd, Johnston D., McCoy C.E., Stinson J.C.
Two new human cancer cell lines.
In Vitro 8:433-434(1973)

DOI=10.1007/978-1-4757-1647-4_2
Leibovitz A.
Development of media for isolation and cultivation of human cancer cells.
(In book chapter) Human tumor cells in vitro; Fogh J. (eds.); pp.23-50; Springer; New York; USA (1975)

PubMed=327080; DOI=10.1093/jnci/59.1.221
Fogh J., Fogh J.M., Orfeo T.
One hundred and twenty-seven cultured human tumor cell lines producing tumors in nude mice.
J. Natl. Cancer Inst. 59:221-226(1977)

PubMed=833871; DOI=10.1093/jnci/58.2.209
Fogh J., Wright W.C., Loveless J.D.
Absence of HeLa cell contamination in 169 cell lines derived from human tumors.
J. Natl. Cancer Inst. 58:209-214(1977)

PubMed=924690; DOI=10.1002/ijc.2910200505
Kerbel R.S., Pross H.F., Leibovitz A.
Analysis of established human carcinoma cell lines for lymphoreticular-associated membrane receptors.
Int. J. Cancer 20:673-679(1977)

PubMed=6244232
Williams R.D.
Human urologic cancer cell lines.
Invest. Urol. 17:359-363(1980)

PubMed=6988327; DOI=10.1007/BF02831503
O'Brien S.J., Shannon J.E., Gail M.H.
A molecular approach to the identification and individualization of human and animal cells in culture: isozyme and allozyme genetic signatures.
In Vitro 16:119-135(1980)

PubMed=7459858
Rousset M., Zweibaum A., Fogh J.
Presence of glycogen and growth-related variations in 58 cultured human tumor cell lines of various tissue origins.
Cancer Res. 41:1165-1170(1981)

PubMed=3518877; DOI=10.3109/07357908609038260
Fogh J.
Human tumor lines for cancer research.
Cancer Invest. 4:157-184(1986)

PubMed=1516062
Yoshimoto K., Iwahana H., Fukuda A., Sano T., Saito S., Itakura M.
Role of p53 mutations in endocrine tumorigenesis: mutation detection by polymerase chain reaction-single strand conformation polymorphism.
Cancer Res. 52:5061-5064(1992)

PubMed=11414198; DOI=10.1007/s004320000207
Lahm H., Andre S., Hoeflich A., Fischer J.R., Sordat B., Kaltner H., Wolf E., Gabius H.-J.
Comprehensive galectin fingerprinting in a panel of 61 human tumor cell lines by RT-PCR and its implications for diagnostic and therapeutic procedures.
J. Cancer Res. Clin. Oncol. 127:375-386(2001)

PubMed=20164919; DOI=10.1038/nature08768; PMCID=PMC3145113
Bignell G.R., Greenman C.D., Davies H.R., Butler A.P., Edkins S., Andrews J.M., Buck G., Chen L., Beare D., Latimer C., Widaa S., Hinton J., Fahey C., Fu B.-Y., Swamy S., Dalgliesh G.L., Teh B.T., Deloukas P., Yang F.-T., Campbell P.J., Futreal P.A., Stratton M.R.
Signatures of mutation and selection in the cancer genome.
Nature 463:893-898(2010)

PubMed=20215515; DOI=10.1158/0008-5472.CAN-09-3458; PMCID=PMC2881662
Rothenberg S.M., Mohapatra G., Rivera M.N., Winokur D., Greninger P., Nitta M., Sadow P.M., Sooriyakumar G., Brannigan B.W., Ulman M.J., Perera R.M., Wang R., Tam A., Ma X.-J., Erlander M., Sgroi D.C., Rocco J.W., Lingen M.W., Cohen E.E.W., Louis D.N., Settleman J., Haber D.A.
A genome-wide screen for microdeletions reveals disruption of polarity complex genes in diverse human cancers.
Cancer Res. 70:2158-2164(2010)

PubMed=21924324; DOI=10.1016/j.mce.2011.08.041; PMCID=PMC3288152
Wang T., Rainey W.E.
Human adrenocortical carcinoma cell lines.
Mol. Cell. Endocrinol. 351:58-65(2012)

PubMed=22266826; DOI=10.1055/s-0031-1298019; PMCID=PMC4269336
Wang T., Rowland J.G., Parmar J., Nesterova M., Seki T., Rainey W.E.
Comparison of aldosterone production among human adrenocortical cell lines.
Horm. Metab. Res. 44:245-250(2012)

PubMed=27397505; DOI=10.1016/j.cell.2016.06.017; PMCID=PMC4967469
Iorio F., Knijnenburg T.A., Vis D.J., Bignell G.R., Menden M.P., Schubert M., Aben N., Goncalves E., Barthorpe S., Lightfoot H., Cokelaer T., Greninger P., van Dyk E., Chang H., de Silva H., Heyn H., Deng X.-M., Egan R.K., Liu Q.-S., Mironenko T., Mitropoulos X., Richardson L., Wang J.-H., Zhang T.-H., Moran S., Sayols S., Soleimani M., Tamborero D., Lopez-Bigas N., Ross-Macdonald P., Esteller M., Gray N.S., Haber D.A., Stratton M.R., Benes C.H., Wessels L.F.A., Saez-Rodriguez J., McDermott U., Garnett M.J.
A landscape of pharmacogenomic interactions in cancer.
Cell 166:740-754(2016)

PubMed=30894373; DOI=10.1158/0008-5472.CAN-18-2747; PMCID=PMC6445675
Dutil J., Chen Z.-H., Monteiro A.N.A., Teer J.K., Eschrich S.A.
An interactive resource to probe genetic diversity and estimated ancestry in cancer cell lines.
Cancer Res. 79:1263-1273(2019)

PubMed=35839778; DOI=10.1016/j.ccell.2022.06.010; PMCID=PMC9387775
Goncalves E., Poulos R.C., Cai Z.-X., Barthorpe S., Manda S.S., Lucas N., Beck A., Bucio-Noble D., Dausmann M., Hall C., Hecker M., Koh J., Lightfoot H., Mahboob S., Mali I., Morris J., Richardson L., Seneviratne A.J., Shepherd R., Sykes E., Thomas F., Valentini S., Williams S.G., Wu Y.-X., Xavier D., MacKenzie K.L., Hains P.G., Tully B., Robinson P.J., Zhong Q., Garnett M.J., Reddel R.R.
Pan-cancer proteomic map of 949 human cell lines.
Cancer Cell 40:835-849.e8(2022)

Cross-references
Cell line collections (Providers) ATCC; CCL-105
BCRC; 60483
BCRJ; 0300
CLS; 300349
ECACC; 87031801
IZSLER; BS TCL 62
JCRB; JCRB9069
KCB; KCB 200780YJ
KCLB; 10105
Cell line databases/resources CLO; CLO_0009185
CLO; CLO_0009209
MCCL; MCC:0000444
CLDB; cl4435
CLDB; cl4436
cancercelllines; CVCL_0542
CCRID; 1101HUM-PUMC000055
CCRID; 3101HUMTCHu221
Cell_Model_Passport; SIDM00814
Cosmic-CLP; 909744
DepMap; ACH-001401
LINCS_LDP; LCL-1676
TOKU-E; 3228
Biological sample resources BioSample; SAMN03472418
BioSample; SAMN03472692
Chemistry resources ChEMBL-Cells; CHEMBL3308467
ChEMBL-Targets; CHEMBL1075587
GDSC; 909744
PharmacoDB; SW13_1529_2019
PubChem_Cell_line; CVCL_0542
Encyclopedic resources Wikidata; Q54971076
Gene expression databases ArrayExpress; E-MTAB-783
ArrayExpress; E-MTAB-3610
GEO; GSM827353
GEO; GSM1670498
Polymorphism and mutation databases Cosmic; 684683
Cosmic; 909744
Cosmic; 1024274
Cosmic; 1179077
Cosmic; 1622872
Cosmic; 2239456
IARC_TP53; 2946
Progenetix; CVCL_0542
Proteomic databases PRIDE; PXD030304
Sequence databases EGA; EGAS00001000978
Entry history
Entry creation04-Apr-2012
Last entry update02-May-2024
Version number43